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Updated: Aug 21, 2026

Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins
Published on: August 9, 2019
Functional interaction between Smad, CREB binding protein, and p68 RNA helicase
Dennis R Warner1, Vasker Bhattacherjee, Xiaolong Yin
1Department of Molecular, Cellular, and Craniofacial Biology, University of Louisville Birth Defects Center, ULSD, Louisville, KY 40292, USA. dennis.warner@louisville.edu
Abstract:
The transforming growth factors beta control a diversity of biological processes including cellular proliferation, differentiation, apoptosis, and extracellular matrix production, and are critical effectors of embryonic patterning and development, including that of the orofacial region. TGFbeta superfamily members signal through specific cell surface receptors that phosphorylate the cytoplasmic Smad proteins, resulting in their translocation to the nucleus and interaction with promoters of TGFbeta-responsive genes. Subsequent alterations in transcription are cell type-specific and dependent on recruitment to the Smad/transcription factor complex of coactivators, such as CBP and p300, or corepressors, such as c-ski and SnoN. Since the affinity of Smads for DNA is generally low, additional accessory proteins that facilitate Smad/DNA binding are required, and are often cell- and tissue-specific. In order to identify novel Smad 3 binding proteins in developing orofacial tissue, a yeast two hybrid assay was employed in which the MH2 domain of Smad 3 was used to screen an expression library derived from mouse embryonic orofacial tissue. The RNA helicase, p68, was identified as a unique Smad binding protein, and the specificity of the interaction was confirmed through various in vitro and in vivo assays. Co-expression of Smad 3 and a CBP-Gal4 DNA binding domain fusion protein in a Gal4-luciferase reporter assay resulted in increased TGFbeta-stimulated reporter gene transcription. Moreover, co-expression of p68 RNA helicase along with Smad 3 and CBP-Gal4 resulted in synergistic activation of Gal4-luciferase reporter expression. Collectively, these data indicate that the RNA helicase, p68, can directly interact with Smad 3 resulting in formation of a transcriptionally active ternary complex containing Smad 3, p68, and CBP. This offers a means of enhancing TGFbeta-mediated cellular responses in developing orofacial tissue.
Insights
The RNA helicase p68 interacts with Smad 3, enhancing transforming growth factor beta (TGF-β) signaling in developing orofacial tissues. This discovery reveals a new mechanism for regulating gene transcription during embryonic development.
Area of Science:
- Molecular Biology
- Developmental Biology
- Cell Signaling
Background:
- Transforming growth factors beta (TGF-β) regulate crucial biological processes, including embryonic development of the orofacial region.
- TGF-β signaling involves Smad proteins, which translocate to the nucleus to regulate gene transcription.
- Smad proteins often require accessory proteins for efficient DNA binding and transcriptional regulation, which can be cell- and tissue-specific.
Purpose of the Study:
- To identify novel Smad 3 binding proteins in developing orofacial tissue.
- To investigate the role of identified proteins in TGF-β-mediated gene transcription.
Main Methods:
- Yeast two-hybrid assay using the MH2 domain of Smad 3 to screen an expression library from mouse embryonic orofacial tissue.
- In vitro and in vivo assays to confirm the specificity of protein interactions.
- Gal4-luciferase reporter assays to assess the impact on TGF-β-stimulated gene transcription.
Main Results:
- The RNA helicase p68 was identified as a novel Smad 3 binding protein.
- p68 directly interacts with Smad 3, forming a transcriptionally active ternary complex with CBP.
- Co-expression of Smad 3, p68, and CBP synergistically activated reporter gene expression.
Conclusions:
- The RNA helicase p68 is a novel Smad 3 interacting protein that enhances TGF-β signaling.
- This interaction facilitates the formation of a transcriptionally active complex, modulating TGF-β-mediated cellular responses.
- p68 represents a potential mechanism for fine-tuning TGF-β signaling during orofacial development.
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