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Updated: Mar 19, 2026

Flow Cytometric Analysis of Apoptotic Biomarkers in Actinomycin D-Treated SiHa Cervical Cancer Cells
Published on: August 26, 2021
Human mitochondrial peptide deformylase, a new anticancer target of actinonin-based antibiotics
Mona D Lee1, Yuhong She, Michael J Soskis
1Department of Molecular Pharmacology and Chemistry, Memorial Sloan-Kettering Cancer Center, New York, New York 10021, USA.
Abstract:
Peptide deformylase activity was thought to be limited to ribosomal protein synthesis in prokaryotes, where new peptides are initiated with an N-formylated methionine. We describe here a new human peptide deformylase (Homo sapiens PDF, or HsPDF) that is localized to the mitochondria. HsPDF is capable of removing formyl groups from N-terminal methionines of newly synthesized mitochondrial proteins, an activity previously not thought to be necessary in mammalian cells. We show that actinonin, a peptidomimetic antibiotic that inhibits HsPDF, also inhibits the proliferation of 16 human cancer cell lines. We designed and synthesized 33 chemical analogs of actinonin; all of the molecules with potent activity against HsPDF also inhibited tumor cell growth, and vice versa, confirming target specificity. Small interfering RNA inhibition of HsPDF protein expression was also antiproliferative. Actinonin treatment of cells led to a tumor-specific mitochondrial membrane depolarization and ATP depletion in a time- and dose-dependent manner; removal of actinonin led to a recovery of the membrane potential consistent with indirect effects on the electron transport chain. In animal models, oral or parenteral actinonin was well tolerated and inhibited human prostate cancer and lung cancer growth. We conclude that HsPDF is a new human mitochondrial enzyme that may provide a novel selective target for anticancer therapy by use of actinonin-based antibiotics.
Insights
A novel human mitochondrial enzyme, peptide deformylase (HsPDF), removes formyl groups from proteins. Inhibiting HsPDF with actinonin shows promise for novel anticancer therapies targeting tumor cell proliferation.
Area of Science:
- Biochemistry
- Molecular Biology
- Cancer Research
Background:
- Peptide deformylase (PDF) activity was traditionally associated with prokaryotic ribosomal protein synthesis.
- This process involves initiating new peptides with N-formylated methionine.
- Its necessity in mammalian cells, particularly in mitochondria, was previously unestablished.
Purpose of the Study:
- To identify and characterize a novel human peptide deformylase (HsPDF).
- To investigate the role of HsPDF in mitochondrial protein synthesis.
- To evaluate the therapeutic potential of inhibiting HsPDF in cancer treatment.
Main Methods:
- Identification and localization of human peptide deformylase (HsPDF) to mitochondria.
- Synthesis and testing of actinonin analogs for HsPDF inhibition and antiproliferative activity.
- Validation using small interfering RNA (siRNA) to inhibit HsPDF expression.
- Assessment of mitochondrial function (membrane potential, ATP levels) and in vivo tumor growth inhibition.
Main Results:
- A novel human mitochondrial peptide deformylase (HsPDF) was identified.
- Actinonin and its analogs potently inhibited HsPDF and human cancer cell proliferation.
- HsPDF inhibition led to mitochondrial dysfunction and ATP depletion in tumor cells.
- Actinonin demonstrated efficacy in inhibiting human prostate and lung cancer growth in animal models.
Conclusions:
- HsPDF is a functional human mitochondrial enzyme.
- HsPDF represents a novel and selective target for anticancer drug development.
- Actinonin-based antibiotics show potential as a new therapeutic strategy against various cancers.
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