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Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry
Published on: June 21, 2018
Chronic and recurrent otitis media: a genome scan for susceptibility loci
Kathleen A Daly1, W Mark Brown, Fernando Segade
1Department of Otolaryngology, School of Public Health, University of Minnesota School of Medicine, Minneapolis, MN, USA.
Insights
Chronic/recurrent otitis media (COME/ROM) risk is linked to multiple gene regions on chromosomes 10q, 19q, and 3p. Genetic factors likely interact with environmental influences for COME/ROM development.
Area of Science:
- Genetics
- Otolaryngology
- Pediatrics
Background:
- Otitis media (OM) is a prevalent childhood illness, with chronic/recurrent OM (COME/ROM) causing significant morbidity.
- COME/ROM demonstrates familial clustering and substantial heritability, suggesting a genetic component.
Purpose of the Study:
- To identify genetic loci associated with COME/ROM.
- To investigate the genetic basis of COME/ROM in families with affected individuals.
Main Methods:
- Recruitment of families with subjects who underwent tympanostomy tube surgery for COME/ROM.
- Clinical ear examinations, tympanometric testing at multiple frequencies, and hearing screenings.
- Single-point nonparametric linkage analysis on 238 affected and informative relative pairs from 121 families.
Main Results:
- Evidence of linkage for COME/ROM to chromosome 10q (marker D10S212, LOD 3.78) and 19q (marker D19S254, LOD 2.61).
- Conditional analysis revealed increased linkage support on chromosome 3p (between markers D3S4545 and D3S1259).
Conclusions:
- COME/ROM risk is influenced by interactions between genes located in multiple genomic regions.
- Environmental risk factors likely modulate the genetic predisposition to COME/ROM.
Abstract:
Otitis media (OM) is the most common childhood disease. Almost all children experience at least one episode, but morbidity is greatest in children who experience chronic/recurrent OM (COME/ROM). There is mounting evidence that COME/ROM clusters in families and exhibits substantial heritability. Subjects who had tympanostomy tube surgery for COME/ROM (probands) and their families were recruited for the present study, and an ear examination was performed, without knowledge of the subject's history, to determine presence of OM sequelae. In addition, tympanometric testing was performed at three frequencies (226, 630 or 710, and 1,400 Hz) to detect abnormal middle-ear mechanics, and hearing was screened at 20 dB for the speech frequencies. Of these families, 121 had at least two individuals who had received the diagnosis of COME/ROM (364 affected and genotyped individuals), of whom 238 affected and informative relative pairs were used for analyses. Single-point nonparametric linkage analysis provided evidence of linkage of COME/ROM to chromosome 10q at marker D10S212 (LOD 3.78; P=3.0 x 10(-5)) and to chromosome 19q at marker D19S254 (LOD 2.61; P=5.3 x 10(-4)). Analyses conditional on support for linkage at chromosomes 10q and 19q resulted in a significant increase in LOD score support on chromosome 3p (between markers D3S4545 and D3S1259). These results suggest that risk of COME/ROM is determined by interactions between genes that reside in several candidate regions of the genome and are probably modulated by other environmental risk factors.
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