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Sequential Salt Extractions for the Analysis of Bulk Chromatin Binding Properties of Chromatin Modifying Complexes
Published on: October 2, 2017
Chromatin compaction by a polycomb group protein complex
Nicole J Francis1, Robert E Kingston, Christopher L Woodcock
1Department of Molecular Biology, Massachusetts General Hospital, Boston, MA 02114, USA.
Summary
Polycomb Repressive Complex 1 compacts chromatin to silence genes during development. This compaction, dependent on nucleosomes but not histone tails, is crucial for maintaining body patterning.
Area of Science:
- Developmental Biology
- Epigenetics
- Molecular Biology
Background:
- Polycomb group proteins are essential for maintaining body patterning during development.
- They achieve this by silencing homeotic genes, but the underlying mechanism remains debated.
- A key hypothesis suggests repressive chromatin structure is involved.
Purpose of the Study:
- To investigate the structural mechanism by which Polycomb Repressive Complex 1 (PRC1) silences genes.
- To determine if PRC1 directly alters chromatin structure to achieve transcriptional repression.
Main Methods:
- Electron microscopy was used to visualize the effect of PRC1 on nucleosomal arrays.
- Experiments assessed the requirement of nucleosomes and histone tails for compaction.
- Structure-function analysis of Posterior Sex Combs (PSC) was performed.
Main Results:
- Core components of PRC1 were shown to induce significant compaction of nucleosomal arrays.
- This compaction effect requires the presence of nucleosomes but not histone tails.
- Each PRC1 complex compacts approximately three nucleosomes.
- A specific region of Posterior Sex Combs, vital for in vivo gene silencing, was also found critical for chromatin compaction.
Conclusions:
- PRC1 directly compacts chromatin structure, providing a physical basis for gene silencing.
- Chromatin compaction by PRC1 is a nucleosome-dependent process, independent of histone tails.
- The findings link the gene silencing and chromatin compaction activities of PRC1, suggesting a conserved mechanism for stable epigenetic regulation.
Related Concept Videos
Chromatin Packaging
Each human somatic cell contains 6 billion base-pairs of DNA. Each base-pair is 0.34 nm long, which means that each diploid cell contains a staggering 2 meters of DNA. How is such a long DNA strand packed inside a nucleus measuring only 10 - 20 microns in diameter?
The chromatin
In combination with specialized DNA binding protein called Histones, the DNA double helix forms a compact DNA: protein complex called chromatin. The chromatin itself is further compacted into higher-order structures.
The chromatin
In combination with specialized DNA binding protein called Histones, the DNA double helix forms a compact DNA: protein complex called chromatin. The chromatin itself is further compacted into higher-order structures.
Euchromatin
The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions take up more dye, appearing darker, while the less-compact areas take up less dye and appear lighter. Based on the compaction level, chromatins are classified into two primary forms – euchromatin and heterochromatin.
Euchromatin is the less dense region of the chromatin and stains lighter. Euchromatin contains histone H3 extensively...
Euchromatin is the less dense region of the chromatin and stains lighter. Euchromatin contains histone H3 extensively...
Heterochromatin
The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions that take up more dye are called heterochromatin. Heterochromatin is further classified into two forms – constitutive heterochromatin and facultative heterochromatin.
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at 9th...
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at 9th...
Euchromatin
The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions take up more dye, appearing darker, while the less-compact areas take up less dye and appear lighter. Based on the compaction level, chromatins are classified into two primary forms – euchromatin and heterochromatin.
Euchromatin is the less dense region of the chromatin and stains lighter. Euchromatin contains histone H3 extensively...
Euchromatin is the less dense region of the chromatin and stains lighter. Euchromatin contains histone H3 extensively...
Heterochromatin
The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions that take up more dye are called heterochromatin. Heterochromatin is further classified into two forms – constitutive heterochromatin and facultative heterochromatin.
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at 9th...
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at 9th...
Chromatin Packaging
Each human somatic cell contains 6 billion base pairs of DNA. Each base pair is 0.34 nm long, meaning each diploid cell contains a staggering 2 meters of DNA. This long DNA strand is packed inside a nucleus measuring only 10-20 microns in diameter with the help of specialized DNA-binding proteins called histones. Together they form a compact DNA-protein complex called chromatin. The chromatin is further compacted into higher-order structures. The highest level of compaction is achieved during...

