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Published on: November 14, 2025
Light-induced global structural changes in phytochrome A regulating photomorphogenesis in plants.
Masayoshi Nakasako1, Tatsuya Iwata, Katsuaki Inoue
1Department of Physics, Faculty of Science and Technology, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Kanagawa 223-8522, Japan. nakasako@phys.keio.ac.jp
Plant phytochromes, light-sensing proteins, change structure upon red light absorption. This study reveals the molecular structures of pea phytochrome A in its red-light-absorbing (Pr) and far-red-light-absorbing (Pfr) states, showing global changes during photoconversion.
Area of Science:
- Plant biology
- Biophysics
- Structural biology
Background:
- Phytochromes are crucial plant photoreceptors regulating growth and development by sensing light.
- They exist in two interconvertible forms, Pr (red-absorbing) and Pfr (far-red-absorbing), initiating signaling pathways.
- Understanding phytochrome structure is key to deciphering light-mediated plant responses.
Purpose of the Study:
- To determine the molecular structures of pea phytochrome A in its Pr and Pfr states.
- To investigate structural changes occurring during the Pr-to-Pfr phototransformation.
- To elucidate the mechanism of light signal transduction in plants.
Main Methods:
- Small-angle X-ray scattering (SAXS) was employed to study pea phytochrome A.
- A novel purification protocol ensured monodispersive sample solutions for SAXS analysis.
- Ab initio simulation methods were used to predict molecular structures from scattering data.
Main Results:
- SAXS data confirmed the dimeric association of pea phytochrome A in the Pr form.
- The predicted structure of Pr approximated a stack of two flat bodies with distinct lobes.
- Red-light irradiation induced subtle but significant structural changes in Pfr, suggesting domain movement.
- Structural changes in Pfr were reversible, primarily through thermal relaxation.
Conclusions:
- The study provides molecular insights into the structural rearrangements of phytochrome A during light-induced transformations.
- Global structural changes, including C-terminal domain movements, accompany the Pr-to-Pfr conversion.
- These findings contribute to understanding how plants perceive and respond to light signals.
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