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Updated: Aug 20, 2026

Affinity Purification of Influenza Virus Ribonucleoprotein Complexes from the Chromatin of Infected Cells
Published on: June 3, 2012
Interaction of influenza virus proteins with nucleosomes
Inmaculada Garcia-Robles1, Hatice Akarsu, Christoph W Müller
1EMBL Grenoble Outstation, BP 181, 38042 Grenoble Cedex 9, France.
Abstract:
During influenza virus infection, transcription and replication of the viral RNA take place in the cell nucleus. Directly after entry in the nucleus the viral ribonucleoproteins (RNPs, the viral subunits containing vRNA, nucleoprotein and the viral polymerase) are tightly associated with the nuclear matrix. Here, we have analysed the binding of RNPs, M1 and NS2/NEP proteins to purified nucleosomes, reconstituted histone octamers and purified single histones. RNPs and M1 both bind to the chromatin components but at two different sites, RNP to the histone tails and M1 to the globular domain of the histone octamer. NS2/NEP did not bind to nucleosomes at all. The possible consequences of these findings for nuclear release of newly made RNPs and for other processes during the infection cycle are discussed.
Insights
Influenza virus ribonucleoproteins (RNPs) and M1 protein bind to histones within the cell nucleus. NS2/NEP protein did not bind to nucleosomes, impacting viral replication and nuclear release.
Area of Science:
- Virology
- Molecular Biology
- Cell Biology
Background:
- Influenza virus transcription and replication occur in the host cell nucleus.
- Viral ribonucleoproteins (RNPs) associate with the nuclear matrix upon entry.
- Understanding RNP and protein interactions with host chromatin is crucial for viral lifecycle comprehension.
Purpose of the Study:
- To investigate the binding interactions of influenza RNPs, M1 protein, and NS2/NEP protein with host cell nucleosomes and histones.
- To elucidate the specific binding sites of these viral components on chromatin structures.
Main Methods:
- Analysis of protein binding to purified nucleosomes, reconstituted histone octamers, and single histones.
- Biochemical assays to determine binding affinities and locations.
Main Results:
- Influenza RNPs bind to the histone tails of nucleosomes.
- M1 protein binds to the globular domain of histone octamers.
- NS2/NEP protein showed no detectable binding to nucleosomes.
Conclusions:
- Viral RNPs and M1 protein interact with distinct sites on host chromatin components.
- These interactions may influence the nuclear release of newly synthesized RNPs.
- Findings provide insights into host-pathogen interactions during influenza virus infection.
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