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Mapping the Structure-Function Relationships of Disordered Oncogenic Transcription Factors Using Transcriptomic Analysis
Published on: June 27, 2020
Myxoid liposarcoma FUS-DDIT3 fusion oncogene induces C/EBP beta-mediated interleukin 6 expression
Melker Göransson1, Erik Elias, Anders Ståhlberg
1Lundberg Laboratory for Cancer Research (LLCR), Department of Pathology, Goteborg University, Gothenburg, Sweden. melker.goransson@llcr.med.gu.se
Abstract:
The myxoid/round cell liposarcoma oncogene FUS-DDIT3 is the result of a translocation derived gene fusion between the splicing factor FUS and DDIT3. In order to investigate the downstream targets of DDIT3, and the transforming effects of the FUS-DDIT3 fusion protein, we have introduced DDIT3-GFP and FUS-DDIT3-GFP constructs into a human fibrosarcoma cell line. The gene expression profiles of stable transfectants were compared to the original fibrosarcoma cell line by microarray analysis. We here report that the NFkappaB and C/EBP beta controlled gene IL6 is upregulated in DDIT3- and FUS-DDIT3-expressing fibrosarcoma cell lines and in myxoid liposarcoma cell lines. Strong expression of the tumor associated multifunctional cytokine interleukin 6 was confirmed both at mRNA and protein level. Knockdown experiments using siRNA against CEBPB transcripts showed that the effect of FUS-DDIT3 on IL6 expression is C/EBP beta dependent. Chromatin immunoprecipitation revealed direct interaction between the IL6 promoter and the C/EBP beta protein. In addition, the effect of DDIT3 and FUS-DDIT3 on the expression of other acute phase genes was examined using real-time PCR. We demonstrate for the first time that DDIT3 and FUS-DDIT3 show opposite transcriptional regulation of IL8 and suggest that FUS-DDIT3 may affect the synergistic activation of promoters regulated by C/EBP beta and NFkappaB.
Insights
The FUS-DDIT3 oncogene upregulates interleukin 6 (IL6) in liposarcoma cells, dependent on C/EBP beta. This study reveals new insights into FUS-DDIT3
Area of Science:
- Oncology
- Molecular Biology
- Gene Expression Analysis
Background:
- The FUS-DDIT3 oncogene, a fusion of FUS and DDIT3, drives myxoid/round cell liposarcoma.
- Understanding downstream targets and transforming effects of FUS-DDIT3 is crucial for liposarcoma research.
Purpose of the Study:
- To investigate the downstream targets of DDIT3.
- To explore the transforming effects of the FUS-DDIT3 fusion protein.
- To analyze gene expression profiles in response to DDIT3 and FUS-DDIT3 expression.
Main Methods:
- Gene expression profiling using microarray analysis.
- Stable transfection of human fibrosarcoma cell lines with DDIT3-GFP and FUS-DDIT3-GFP constructs.
- Quantitative analysis of mRNA and protein expression.
- siRNA-mediated knockdown of CEBPB transcripts.
- Chromatin immunoprecipitation (ChIP) assays.
- Real-time PCR for gene expression analysis.
Main Results:
- Interleukin 6 (IL6) is upregulated in fibrosarcoma cell lines expressing DDIT3 and FUS-DDIT3, as well as in myxoid liposarcoma cell lines.
- IL6 upregulation is dependent on C/EBP beta, with FUS-DDIT3 directly interacting with the IL6 promoter via C/EBP beta.
- DDIT3 and FUS-DDIT3 exhibit opposing transcriptional regulation of IL8.
- FUS-DDIT3 may influence synergistic activation of promoters regulated by C/EBP beta and NFkappaB.
Conclusions:
- FUS-DDIT3 oncogene drives IL6 expression in a C/EBP beta-dependent manner.
- The study elucidates a novel regulatory mechanism involving FUS-DDIT3, C/EBP beta, and IL6 in liposarcoma pathogenesis.
- Differential regulation of acute phase genes like IL8 by DDIT3 and FUS-DDIT3 suggests distinct functional roles.
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