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Updated: Aug 19, 2026

Immunopeptidomics: Isolation of Mouse and Human MHC Class I- and II-Associated Peptides for Mass Spectrometry Analysis
Published on: October 15, 2021
Spatial separation of HLA-DM/HLA-DR interactions within MIIC and phagosome-induced immune escape
Wilbert Zwart1, Alexander Griekspoor, Coenraad Kuijl
1Division of Tumor Biology , Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.
Abstract:
Major Histocompatibility Complex (MHC) class II molecules, including Human Leukocyte Antigen (HLA)-DR, present peptide fragments from proteins degraded in the endocytic pathway. HLA-DR is targeted to late-endocytic structures named MHC class II-containing Compartments (MIIC), where it interacts with HLA-DM. This chaperone stabilizes HLA-DR during peptide exchange and is critical for successful peptide loading. To follow this process in living cells, we have generated cells containing HLA-DR3/Cyan Fluorescent Protein (CFP), HLA-DM/Yellow Fluorescent Protein (YFP), and invariant chain. HLA-DR/DM interactions were observed by Fluorescence Resonance Energy Transfer (FRET). These interactions were pH insensitive, yet occurred only in internal structures and not at the limiting membrane of MIIC. In a cellular model of infection, phagosomes formed a limiting membrane surrounding internalized Salmonella. HLA-DR and HLA-DM did not interact in Salmonella-induced vacuoles, and HLA-DR was not loaded with antigens. The absence of HLA-DR/DM interactions at the limiting membrane prevents local loading of MHC class II molecules in phagosomes. This may allow these bacteria to successfully evade the immune system.
Insights
Major Histocompatibility Complex (MHC) class II molecules, like Human Leukocyte Antigen (HLA)-DR, are crucial for presenting antigens. This study reveals HLA-DR and HLA-DM interactions are absent in Salmonella-infected phagosomes, hindering antigen presentation and immune evasion.
Area of Science:
- Immunology
- Cell Biology
- Molecular Biology
Background:
- Major Histocompatibility Complex (MHC) class II molecules present peptides from endocytic pathways.
- Human Leukocyte Antigen (HLA)-DR targets MHC class II-containing Compartments (MIIC) for peptide loading.
- HLA-DM stabilizes HLA-DR during critical peptide exchange.
Purpose of the Study:
- To visualize HLA-DR and HLA-DM interactions in living cells using FRET.
- To investigate the impact of Salmonella infection on MHC class II antigen loading.
- To understand the mechanisms of immune evasion by pathogens.
Main Methods:
- Generated cells expressing fluorescently tagged HLA-DR (CFP) and HLA-DM (YFP).
- Utilized Fluorescence Resonance Energy Transfer (FRET) to detect molecular interactions.
- Employing a cellular model of Salmonella infection to study phagosome function.
Main Results:
- Observed pH-insensitive HLA-DR/HLA-DM interactions within internal MIIC structures.
- Found no HLA-DR/HLA-DM interaction at the limiting membrane of MIIC.
- Demonstrated absence of HLA-DR/HLA-DM interaction and antigen loading in Salmonella-induced phagosomes.
Conclusions:
- The lack of HLA-DR/HLA-DM interaction at the phagosome membrane prevents antigen loading.
- Salmonella may evade immune detection by inhibiting MHC class II antigen presentation.
- Targeting these interactions could offer novel therapeutic strategies.
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