A novel kernel method for clustering
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Updated: Mar 24, 2026

JUMPn: A Streamlined Application for Protein Co-Expression Clustering and Network Analysis in Proteomics
Published on: October 19, 2021
Francesco Camastra1, Alessandro Verri
1INFM-DISI, Università di Genova, Via Dodecaneso 35, 16146 Genova, Italy. camastra@ieee.org
Abstract:
Kernel Methods are algorithms that, by replacing the inner product with an appropriate positive definite function, implicitly perform a nonlinear mapping of the input data into a high-dimensional feature space. In this paper, we present a kernel method for clustering inspired by the classical K-Means algorithm in which each cluster is iteratively refined using a one-class Support Vector Machine. Our method, which can be easily implemented, compares favorably with respect to popular clustering algorithms, like K-Means, Neural Gas, and Self-Organizing Maps, on a synthetic data set and three UCI real data benchmarks (IRIS data, Wisconsin breast cancer database, Spam database).
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