Nucleotide binding to CARD12 and its role in CARD12-mediated caspase-1 activation

Chafen Lu1, Anlai Wang, Lin Wang

  • 1Millennium Pharmaceuticals, Inc., 35 Landsdowne Street, Cambridge, MA 02139, USA. chafenlu@berkeley.edu

Insights

The CARD12 protein

Area of Science:

  • Molecular Biology
  • Immunology
  • Protein Biochemistry

Background:

  • CARD12 (Ipaf/Clan) is a key regulator of caspase-1 activation, belonging to the nucleotide-binding site and leucine-rich repeat (NBS-LRR) protein family.
  • NBS-LRR proteins possess a nucleotide-binding site (NBS) domain with conserved motifs, but its specific nucleotide-binding properties and functional role in CARD12 remain uncharacterized.

Purpose of the Study:

  • To investigate the nucleotide-binding properties of the CARD12 NBS domain.
  • To determine the functional significance of nucleotide binding for CARD12-mediated caspase-1 activation.

Main Methods:

  • Development of a novel nucleotide-binding assay to study CARD12.
  • Site-directed mutagenesis of the P-loop motif (K175R) within the NBS domain.
  • Assessment of CARD12 self-association, procaspase-1 interaction, and pro-interleukin-1beta processing in transfected cells.

Main Results:

  • The NBS domain of CARD12 specifically binds ATP/dATP.
  • A P-loop mutation (K175R) abolished ATP/dATP binding to CARD12.
  • This mutation significantly impaired CARD12 self-association, procaspase-1 binding, and subsequent caspase-1 activation-dependent processing of pro-interleukin-1beta.

Conclusions:

  • CARD12's function in caspase-1 activation is critically dependent on its nucleotide-binding site.
  • The P-loop motif and its nucleotide-binding capability are essential for CARD12's molecular interactions and signaling.
  • These findings elucidate key molecular mechanisms underlying CARD12-mediated inflammatory responses.

Related Concept Videos

Caspases01:24

Caspases

Caspase, a family of cysteine proteases, serve as effectors in apoptosis. The ced3 gene in C.elegans was first identified to be involved in apoptosis. This gene encodes the ced-3 caspase that is similar to the interleukin-1-beta converting enzyme or ICE in mammals. In addition to apoptosis, caspases also function in the inflammatory response. Inflammatory caspases are essential in activating pro-inflammatory cytokines that recruit immune cells and block the replication of pathogens inside cells.
The Extrinsic Apoptotic Pathway01:17

The Extrinsic Apoptotic Pathway

The extrinsic apoptotic pathway is initiated when extracellular death-inducing signals, such as specific cytokines, activate the death receptors expressed on the cell surface. The immune cells involved in this pathway are natural killer cells (NK cells) and cytotoxic T-lymphocytes. NK cells are critical in innate immune response, while cytotoxic T-lymphocytes are associated with adaptive immune response. These cells recognize specific receptors expressed on the altered cells and activate...
Allosteric Proteins-ATCase01:19

Allosteric Proteins-ATCase

Binding sites linkages can regulate a protein's function.  For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to  N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis pathway,...
The Intrinsic Apoptotic Pathway01:31

The Intrinsic Apoptotic Pathway

Internal cellular stress, such as cellular injury or hypoxia, triggers intrinsic apoptosis. The B-cell lymphoma 2 (Bcl-2) family of proteins are the primary regulators of the intrinsic apoptotic pathway. For example, during DNA damage, checkpoint proteins, such as Ataxia Telangiectasia Mutated (ATM protein) and Checkpoints Factor-2 (Chk2) proteins, are activated. These proteins phosphorylate p53 which further activates pro-apoptotic proteins, such as Bax, Bak, PUMA, and Noxa, and inhibits...
MAPK Signaling Cascades01:07

MAPK Signaling Cascades

Mitogen-activated protein kinase, or MAPK pathway, activates three sequential kinases to regulate cellular responses such as proliferation, differentiation, survival, and apoptosis. The canonical MAPK pathway starts with a mitogen or growth factor binding to an RTK. The activated RTKs stimulate Ras, which recruits Raf or MAP3 Kinase (MAPKKK), the first kinase of the MAPK signaling cascade. Raf further phosphorylates and activates MEK or MAP2 Kinases (MAPKK), which in turn phosphorylates MAP...
Ligand Binding and Linkage00:49

Ligand Binding and Linkage

Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked.  In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence the...