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Applying a grid technology to protein structure predictor "ROKKY"
Kazutoshi Fujikawa1, Wenzhen Jin, Sung-Joon Park
1Information Technology Center, Nara Institute of Science and Technology, Japan. fujikawa@itc.naist.jp
Abstract:
This paper describes a sub-project of BioGrid project called "HTC (High Throughput Computing) group." Generally, a protein structure prediction which requires large amount of computational resources is done by trial-and-error method. HTC group have been developing a high throughput computing system with a flexible workflow handling mechanism for a protein structure prediction. In this paper, we show how to apply our high throughput computing system to the protein structure predictor called "ROKKY."
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