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Validation of Deep-Learning Models for Autosegmentation of Brain Metastases
Wenjie Liang1, Jikai Zhou1, Petros Kalendralis1
1Department of Radiation Oncology (Maastro), GROW Research Institute for Oncology and Reproduction, Maastricht University Medical Centre+, Maastricht, The Netherlands.
Studies in Health Technology and Informatics
|July 3, 2026
Summary
Deep learning models, nnU-Net and MedNeXt, show promise for automating brain metastases segmentation in MRI scans, aiding radiotherapy planning. nnU-Net models demonstrated slightly superior performance in this validation study.
Area of Science:
- Radiology and Medical Imaging
- Artificial Intelligence in Medicine
- Oncology
Background:
- Radiotherapy planning for brain metastases is currently a manual and lengthy process.
- Automated segmentation using deep learning can potentially streamline this workflow.
- nnU-Net and MedNeXt are leading deep learning frameworks for medical image segmentation.
Purpose of the Study:
- To validate four pre-trained deep learning models (nnU-Net and MedNeXt) for brain metastases segmentation.
- To assess model performance on an external cohort of 243 patients.
- To compare the efficacy of nnU-Net versus MedNeXt frameworks for this task.
Main Methods:
- Utilized a dataset of 243 patients with pre-treatment T1-weighted contrast-enhanced 3D brain MRI scans.
- Employed four pre-trained deep learning models based on nnU-Net and MedNeXt architectures.
- Evaluated segmentation performance using established metrics.
Main Results:
- Models trained on combined datasets exhibited improved performance.
- nnU-Net based models showed a slight performance advantage over MedNeXt models.
- All validated models demonstrated potential for automated brain metastases segmentation.
Conclusions:
- Pre-trained nnU-Net and MedNeXt models are viable tools for automated brain metastases segmentation.
- nnU-Net models offer slightly better performance compared to MedNeXt for this specific application.
- Further validation with follow-up imaging is recommended to assess long-term performance and clinical utility.