Related Experiment Video
Updated: Dec 28, 2025

Exploring Caspase Mutations and Post-Translational Modification by Molecular Modeling Approaches
Published on: October 13, 2022
Engineering a dimeric caspase-9: a re-evaluation of the induced proximity model for caspase activation
Yang Chao1, Eric N Shiozaki, Srinivasa M Srinivasula
1Department of Molecular Biology, Lewis Thomas Laboratory, Princeton University, Princeton, New Jersey, USA.
Abstract:
Caspases are responsible for the execution of programmed cell death (apoptosis) and must undergo proteolytic activation, in response to apoptotic stimuli, to function. The mechanism of initiator caspase activation has been generalized by the induced proximity model, which is thought to drive dimerization-mediated activation of caspases. The initiator caspase, caspase-9, exists predominantly as a monomer in solution. To examine the induced proximity model, we engineered a constitutively dimeric caspase-9 by relieving steric hindrance at the dimer interface. Crystal structure of the engineered caspase-9 closely resembles that of the wild-type (WT) caspase-9, including all relevant structural details and the asymmetric nature of two monomers. Compared to the WT caspase-9, this engineered dimer exhibits a higher level of catalytic activity in vitro and induces more efficient cell death when expressed. However, the catalytic activity of the dimeric caspase-9 is only a small fraction of that for the Apaf-1-activated caspase-9. Furthermore, in contrast to the WT caspase-9, the activity of the dimeric caspase-9 can no longer be significantly enhanced in an Apaf-1-dependent manner. These findings suggest that dimerization of caspase-9 may be qualitatively different from its activation by Apaf-1, and in conjunction with other evidence, posit an induced conformation model for the activation of initiator caspases.
Insights
Engineered dimers of caspase-9 showed increased activity but differed from Apaf-1 activation. This suggests apoptosis initiator caspase activation involves an induced conformation, not just proximity.
Area of Science:
- Biochemistry
- Molecular Biology
- Cell Biology
Background:
- Caspases execute programmed cell death (apoptosis) and require proteolytic activation.
- The induced proximity model suggests dimerization drives initiator caspase activation.
- Caspase-9, an initiator caspase, primarily exists as a monomer.
Purpose of the Study:
- To investigate the induced proximity model of caspase activation.
- To engineer a constitutively dimeric caspase-9 and assess its activity.
- To compare dimerization-mediated activation with Apaf-1-dependent activation.
Main Methods:
- Engineered a constitutively dimeric caspase-9 by altering the dimer interface.
- Determined the crystal structure of the engineered caspase-9.
- Assessed in vitro catalytic activity and cell death induction.
- Evaluated Apaf-1-dependent activity enhancement.
Main Results:
- Engineered dimeric caspase-9 retained structural similarity to wild-type (WT) caspase-9.
- The engineered dimer exhibited higher catalytic activity and induced more efficient cell death than WT caspase-9.
- Dimeric caspase-9 activity was a fraction of Apaf-1-activated caspase-9 and could not be further enhanced by Apaf-1.
- WT caspase-9 activity was significantly enhanced by Apaf-1.
Conclusions:
- Dimerization of caspase-9 may be distinct from Apaf-1-mediated activation.
- Findings support an induced conformation model for initiator caspase activation.
- Apaf-1-dependent activation likely involves conformational changes beyond simple dimerization.
Related Concept Videos
CRISPR/Cas9 Genome Editing
Caspases
CRISPR
The Extrinsic Apoptotic Pathway
Conservative Site-specific Recombination and Phase Variation
The recognition sites for Cre recombinase called LoxP...

