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Isolation of Fidelity Variants of RNA Viruses and Characterization of Virus Mutation Frequency
Published on: June 16, 2011
Paramyxovirus mRNA editing, the "rule of six" and error catastrophe: a hypothesis
Daniel Kolakofsky1, Laurent Roux1, Dominique Garcin1
1Department of Microbiology and Molecular Medicine, Université de Genève, Geneva, Switzerland.
Abstract:
The order Mononegavirales includes three virus families that replicate in the cytoplasm: the Paramyxoviridae, composed of two subfamilies, the Paramyxovirinae and Pneumovirinae, the Rhabdoviridae and the Filoviridae. These viruses, also called non-segmented negative-strand RNA viruses (NNV), contain five to ten tandemly linked genes, which are separated by conserved junctional sequences that act as mRNA start and poly(A)/stop sites. For the NNV, downstream mRNA synthesis depends on termination of the upstream mRNA, and all NNV RNA-dependent RNA polymerases reiteratively copy ("stutter" on) a short run of template uridylates during transcription to polyadenylate and terminate their mRNAs. The RNA-dependent RNA polymerase of a subset of the NNV, all members of the Paramyxovirinae, also stutter in a very controlled fashion to edit their phosphoprotein gene mRNA, and Ebola virus, a filovirus, carries out a related process on its glycoprotein mRNA. Remarkably, all viruses that edit their phosphoprotein mRNA are also governed by the "rule of six", i.e. their genomes must be of polyhexameric length (6n+0) to replicate efficiently. Why these two seemingly unrelated processes are so tightly linked in the Paramyxovirinae has been an enigma. This paper will review what is presently known about these two processes that are unique to viruses of this subfamily, and will discuss whether this enigmatic linkage could be due to the phenomenon of RNA virus error catastrophe.
Insights
Non-segmented negative-strand RNA viruses (NNV) exhibit unique mRNA editing and genome length regulation. This review explores the enigmatic link between phosphoprotein mRNA editing and the "rule of six" in Paramyxovirinae viruses.
Area of Science:
- Virology
- Molecular Biology
- Genetics
Background:
- The order Mononegavirales comprises three RNA virus families: Paramyxoviridae, Rhabdoviridae, and Filoviridae.
- These non-segmented negative-strand RNA viruses (NNV) possess 5-10 tandemly linked genes with conserved intergenic sequences.
- NNV RNA-dependent RNA polymerases stutter on template uridylates for mRNA polyadenylation and termination.
Purpose of the Study:
- To review current knowledge on mRNA editing and the "rule of six" in Paramyxovirinae.
- To investigate the enigmatic linkage between these two unique viral processes.
- To discuss the potential role of RNA virus error catastrophe in this linkage.
Main Methods:
- Literature review of viral transcription, mRNA editing, and genome replication mechanisms.
- Comparative analysis of Paramyxovirinae, Rhabdoviridae, and Filoviridae.
- Discussion of RNA virus error catastrophe as a unifying hypothesis.
Main Results:
- Paramyxovirinae viruses exhibit controlled stuttering for phosphoprotein mRNA editing.
- Ebola virus (Filoviridae) shows a related editing process on its glycoprotein mRNA.
- Viruses with phosphoprotein mRNA editing adhere to the "rule of six" for efficient replication.
Conclusions:
- The tight linkage between mRNA editing and the "rule of six" in Paramyxovirinae remains an enigma.
- RNA virus error catastrophe is proposed as a potential explanation for this linkage.
- Further research is needed to elucidate the precise mechanisms governing these unique viral phenomena.
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