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Updated: Aug 17, 2026

Expression of Recombinant Proteins in the Methylotrophic Yeast Pichia pastoris
Published on: February 25, 2010
[Optimization of the expression of human DNA topoisomerase I in Pichia pastoris]
Guo-Wu Yang1, Bao-Hong Yuan, Kwok-Ping Ho
1Department of Biochemistry, School of Life Sciences, ZhongShan (Sun Yat-sen) University, GuangZhou 510275, China.
Abstract:
Human DNA Topoisomerase I (hTopo I) has been identified to be an efficient target of many effective antitumor drugs. Natural hTopo I is not convenient to be used in screening because of its low concentration in cells. In order to fast screen new anticancer drugs targeting at hTopo I from natural compounds in vitro, hTopo I gene open reading frame (ORF) has been successfully cloned and overexpressed in Pichia pastoris. Total RNA extracted from Hela cells was reversely transcripted to synthesize cDNA with the hTopo I specific antisense primer and the hTopo I ORF was synthesized by PCR. After digestion with EcoR I and Kpn I, the synthesized fragment was inserted into pPICZaA, gave rise to pPICZalpha-hTopoI. After digestion with Sac I, the lined pPICZalpha-hTopoI was transformed into Pichia pastoris strains (KM71, X33 and SMD1168) by electroporation and integrated into their genome. After screened on YPDS plates (containing 1000 ug/mL zeocin), the high-copy recombinant strains (KM-hTopoI, X33-hTopoI and SMD-hTopol) could overexpress recombinant hTopo I, which was fused to the alpha-factor secretion signal and could be secreted into the supernatant in the culture. alpha-factor could be cleaved from the expressed protein during secretion. A higher activity amount of the enzyme was secreted by the particular strain SMD-hTopoI because of its absence of proteimase A than by other strains which possess proteinase A activity. After optimizing the fermentation conditions, a relatively higher enzyme activity in the culture supernatant could be obtained when SMD-hTopoI was induced in BMMY (pH7.25) at 20 degrees C , with addition of 0.5% (V/V) methanol and 3% (V/V) nutrient liquid every 24h. The enzyme activity reached 43 000 u/mL, the yield reached 11 mg/L, achieving approximate 10% of total protein in the culture supernatant. SDS-PAGE and Western blot analyses showed that the mass of the recombinant hTopo I was 91 kD with no glycosylation.
Insights
Researchers developed a method to overexpress human DNA Topoisomerase I (hTopo I) in Pichia pastoris for efficient anticancer drug screening. This recombinant hTopo I is secreted and highly active, facilitating in vitro drug discovery.
Area of Science:
- Molecular Biology
- Biotechnology
- Enzyme Engineering
Context:
- Human DNA Topoisomerase I (hTopo I) is a validated target for anticancer drugs.
- Low natural hTopo I concentrations hinder efficient in vitro drug screening.
- Recombinant protein expression systems are crucial for producing sufficient target enzymes.
Purpose:
- To develop a system for overexpressing and secreting active human DNA Topoisomerase I (hTopo I) in Pichia pastoris.
- To facilitate high-throughput screening of natural compounds as potential anticancer drugs targeting hTopo I.
- To optimize fermentation conditions for maximizing recombinant hTopo I yield and activity.
Summary:
- The open reading frame (ORF) of the hTopo I gene was cloned and expressed in Pichia pastoris strains.
- Recombinant hTopo I was successfully secreted into the culture supernatant, with the SMD1168 strain showing higher activity.
- Optimized fermentation conditions yielded high enzyme activity (43,000 u/mL) and protein yield (11 mg/L) with no glycosylation.
Impact:
- Provides a robust and scalable source of active recombinant hTopo I for drug discovery.
- Enables efficient in vitro screening of natural product libraries for novel anticancer agents.
- Advances the development of new therapeutic strategies targeting DNA Topoisomerase I.
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