Related Experiment Video
Updated: Aug 16, 2026

Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules
Published on: July 25, 2013
Deterministic global optimization of molecular structures using interval analysis
Youdong Lin1, Mark A Stadtherr
1Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, Indiana 46556.
Abstract:
The search for the global minimum of a molecular potential energy surface is a challenging problem. The molecular structure corresponding to the global minimum is of particular importance because it usually dictates both the physical and chemical properties of the molecule. The existence of an extremely large number of local minima, the number of which may increase exponentially with the size of the molecule, makes this global minimization problem extremely difficult. A new strategy is described here for solving such global minimization problems deterministically. The methodology is based on interval analysis, and provides a mathematical and computational guarantee that the molecular structure with the global minimum potential energy will be found. The technique is demonstrated using two sets of example problems. The first set involves a relatively simple potential model, and problems with up to 40 atoms. The second set involves a more realistic potential energy function, representative of those in current use, and problems with up to 11 atoms.
Related Concept Videos
Experimental Determination of Chemical Formula
Predicting Molecular Geometry
Molecular Geometry and Dipole Moments
¹H NMR of Conformationally Flexible Molecules: Variable-Temperature NMR
Determination of Crystal Structures
Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving
In individual population analyses, different algorithms are employed, such as Cauchy's method, which uses a...

