Related Experiment Video
Updated: Jul 11, 2026

Screening for Functional Non-coding Genetic Variants Using Electrophoretic Mobility Shift Assay (EMSA) and DNA-affinity Precipitation Assay (DAPA)
Published on: August 21, 2016
Identification of JAK/STAT signalling components by genome-wide RNA interference
Patrick Müller1, David Kuttenkeuler, Viola Gesellchen
1Department of Molecular Developmental Biology, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany.
Abstract:
Signalling pathways mediating the transduction of information between cells are essential for development, cellular differentiation and homeostasis. Their dysregulation is also frequently associated with human malignancies. The Janus tyrosine kinase/signal transducer and activator of transcription (JAK/STAT) pathway represents one such signalling cascade whose evolutionarily conserved roles include cell proliferation and haematopoiesis. Here we describe a systematic genome-wide survey for genes required for JAK/STAT pathway activity. Analysis of 20,026 RNA interference (RNAi)-induced phenotypes in cultured Drosophila melanogaster haemocyte-like cells identified interacting genes encoding 4 known and 86 previously uncharacterized proteins. Subsequently, cell-based epistasis experiments were used to classify these proteins on the basis of their interaction with known components of the signalling cascade. In addition to multiple human disease gene homologues, we have found the tyrosine phosphatase Ptp61F and the Drosophila homologue of BRWD3, a bromo-domain-containing protein disrupted in leukaemia. Moreover, in vivo analysis demonstrates that disrupted dBRWD3 and overexpressed Ptp61F function as suppressors of leukaemia-like blood cell tumours. This screen represents a comprehensive identification of novel loci required for JAK/STAT signalling and provides molecular insights into an important pathway relevant for human cancer. Human homologues of identified pathway modifiers may constitute targets for therapeutic interventions.
Insights
Researchers identified genes crucial for the Janus tyrosine kinase/signal transducer and activator of transcription (JAK/STAT) pathway. This discovery offers new insights into cancer development and potential therapeutic targets.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- Cellular signalling pathways are vital for development and homeostasis.
- Dysregulation of signalling pathways, including the Janus tyrosine kinase/signal transducer and activator of transcription (JAK/STAT) pathway, is linked to human cancers.
- The JAK/STAT pathway regulates critical cellular processes like proliferation and haematopoiesis.
Purpose of the Study:
- To conduct a genome-wide survey to identify genes essential for JAK/STAT pathway activity.
- To classify newly identified interacting proteins based on their functional relationship with known JAK/STAT components.
- To explore the role of identified genes and their human homologues in cancer biology.
Main Methods:
- Systematic genome-wide RNA interference (RNAi) screen in Drosophila melanogaster haemocyte-like cells.
- Analysis of 20,026 RNAi-induced phenotypes to identify interacting genes.
- Cell-based epistasis experiments to functionally categorize identified proteins.
- In vivo analysis of specific gene functions in leukaemia models.
Main Results:
- Identified 90 genes required for JAK/STAT pathway activity, including 4 known and 86 previously uncharacterized proteins.
- Discovered the tyrosine phosphatase Ptp61F and the Drosophila homologue of BRWD3 (dBRWD3).
- Demonstrated that disrupted dBRWD3 and overexpressed Ptp61F suppress leukaemia-like blood cell tumours in vivo.
Conclusions:
- This study provides a comprehensive identification of novel genes involved in JAK/STAT signalling.
- The findings offer molecular insights into the JAK/STAT pathway's relevance to human cancer.
- Human homologues of the identified pathway modifiers represent potential therapeutic targets for cancer treatment.
More Related Videos
Related Concept Videos
RNA Interference
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
RNA Interference
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
piRNA - Piwi-interacting RNAs
Experimental RNAi
Ribosome Profiling
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique helps...
The JAK-STAT Signaling Pathway

