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Published on: June 30, 2023
Dnm1 forms spirals that are structurally tailored to fit mitochondria
Elena Ingerman1, Edward M Perkins, Michael Marino
1Department of Molecular and Cellular Biology, Center for Genetics and Development, University of California, Davis, Davis, CA 95616, USA.
Abstract:
Dynamin-related proteins (DRPs) are large self-assembling GTPases whose common function is to regulate membrane dynamics in a variety of cellular processes. Dnm1, which is a yeast DRP (Drp1/Dlp1 in humans), is required for mitochondrial division, but its mechanism is unknown. We provide evidence that Dnm1 likely functions through self-assembly to drive the membrane constriction event that is associated with mitochondrial division. Two regulatory features of Dnm1 self-assembly were also identified. Dnm1 self-assembly proceeded through a rate-limiting nucleation step, and nucleotide hydrolysis by assembled Dnm1 structures was highly cooperative with respect to GTP. Dnm1 formed extended spirals, which possessed diameters greater than those of dynamin-1 spirals but whose sizes, remarkably, were equal to those of mitochondrial constriction sites in vivo. These data suggest that Dnm1 has evolved to form structures that fit the dimensions of mitochondria.
Insights
Dynamin-related protein 1 (Dnm1) self-assembly drives mitochondrial division by forming spirals that constrict membranes. Its nucleotide hydrolysis and nucleation steps regulate this essential cellular process.
Area of Science:
- Cell Biology
- Molecular Biology
- Biochemistry
Background:
- Dynamin-related proteins (DRPs) are crucial GTPases regulating membrane dynamics in cellular processes.
- Dnm1, a yeast DRP, is essential for mitochondrial division, but its precise mechanism remains unclear.
Purpose of the Study:
- To elucidate the mechanism by which Dnm1 mediates mitochondrial division.
- To identify regulatory features governing Dnm1 self-assembly and function.
Main Methods:
- Investigated Dnm1 self-assembly in vitro.
- Analyzed Dnm1's interaction with GTP and its hydrolysis.
- Characterized the structure of assembled Dnm1 using electron microscopy.
Main Results:
- Dnm1 self-assembly drives membrane constriction during mitochondrial division.
- Dnm1 self-assembly involves a rate-limiting nucleation step.
- Nucleotide hydrolysis by assembled Dnm1 is highly cooperative with GTP.
- Assembled Dnm1 forms spirals with diameters matching mitochondrial constriction sites.
Conclusions:
- Dnm1 functions through self-assembly to constrict mitochondrial membranes.
- The structure of Dnm1 assemblies is adapted to the dimensions of mitochondrial division sites.
- Understanding Dnm1 regulation provides insights into mitochondrial dynamics and cellular membrane remodeling.
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