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Updated: Aug 15, 2026

Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins
Published on: June 11, 2015
Molecular basis for the exploitation of spore formation as survival mechanism by virulent phage phi29
Wilfried J J Meijer1, Virginia Castilla-Llorente, Laurentino Villar
1Instituto de Biología Molecular Eladio Viñuela (CSIC), Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Universidad Autónoma, Canto Blanco, Madrid, Spain. wmeijer@cbm.uam.es
Abstract:
Phage phi29 is a virulent phage of Bacillus subtilis with no known lysogenic cycle. Indeed, lysis occurs rapidly following infection of vegetative cells. Here, we show that phi29 possesses a powerful strategy that enables it to adapt its infection strategy to the physiological conditions of the infected host to optimize its survival and proliferation. Thus, the lytic cycle is suppressed when the infected cell has initiated the process of sporulation and the infecting phage genome is directed into the highly resistant spore to remain dormant until germination of the spore. We have also identified two host-encoded factors that are key players in this adaptive infection strategy. We present evidence that chromosome segregation protein Spo0J is involved in spore entrapment of the infected phi29 genome. In addition, we demonstrate that Spo0A, the master regulator for initiation of sporulation, suppresses phi29 development by repressing the main early phi29 promoters via different and novel mechanisms and also by preventing activation of the single late phi29 promoter.
Insights
Phage phi29 adapts its infection strategy to Bacillus subtilis sporulation. The phage genome enters dormant spores, suppressed by Spo0A and aided by Spo0J, optimizing survival.
Area of Science:
- Microbiology
- Virology
- Bacterial Genetics
Background:
- Phage phi29 is a virulent phage of Bacillus subtilis, typically causing rapid lysis.
- Lysogeny, a dormant phage state, is not a known characteristic of phi29 infections.
Purpose of the Study:
- To investigate the adaptive infection strategies of phage phi29 in Bacillus subtilis.
- To understand how phi29 optimizes its survival and proliferation under different host physiological conditions.
Main Methods:
- Observational studies on phage phi29 infection dynamics in Bacillus subtilis.
- Analysis of host-encoded factors involved in phage-host interactions during sporulation.
- Investigating the roles of Spo0J and Spo0A in phage genome management and replication.
Main Results:
- Phage phi29 suppresses its lytic cycle when Bacillus subtilis initiates sporulation.
- The phage genome is directed into resistant spores for dormancy, awaiting germination.
- Host factors Spo0J and Spo0A were identified as key players in this adaptive strategy.
- Spo0J is involved in entrapping the phage genome within the spore.
- Spo0A represses phi29 development by inhibiting key phage promoters.
Conclusions:
- Phage phi29 employs a sophisticated adaptive strategy to ensure survival by exploiting the host's sporulation process.
- This mechanism allows the phage to enter a dormant state within spores, reactivating upon germination.
- The interaction involves host factors Spo0J and Spo0A, highlighting a novel phage-host regulatory interplay.
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