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Preparation of Fungal and Plant Materials for Structural Elucidation Using Dynamic Nuclear Polarization Solid-State NMR
Published on: February 12, 2019
Chemical properties and NMR spectroscopic identification of certain fungal siderophores
Arefa Baakza1, B P Dave, H C Dube
1Department of Life Sciences, Bhavnagar University, Bhavnagar 364002, India.
Abstract:
Siderophores of six fungi viz. Aspergillus sp. ABp4, Aureobacidium pullulans, Penicillium oxalicum, P. chrysosporium, Mycotypha africana and Syncephalastrum racemosum were examined for their (1) electrophoretic mobilities to determine the acidic, basic or neutral charge; (2) Fe (III) binding nature viz., mono-, di-, or trihydroxamate; (3) amino acid composition; and (4) NMR (nuclear magnetic resonance) spectroscopy to determine their structure. Electrophoretic mobilities of siderophores of 3 fungi (P. oxalicum, P. chrysosporium, and M, africana) exhibited net basic charge, siderophores of 2 fungi (Aspergillus sp. ABp4 and S. racemosum) were acidic and 1 fungus (A. pullullans) was neutral. Electrophoresis of ferrated siderophore at pH 2 and colour of the spots indicated that siderophores of Aspergillus sp. ABp4 and P. oxalicum and A. pullulans were trihydroxamates, whereas siderophore of P. chrysosporium was dihydroxamate. Amino acid composition of siderophores purified by XAD-2 column chromatography, revealed the presence of asparagine, histidine, and proline in Aspergillus sp. ABp4, serine and alanine in P. chrysosporium, and valine in M. africana. The structure of purified siderophores as revealed by NMR spectroscopy identified siderophore of AB - 2670 (A. pullulans) as asperchrome F1, and AB-513 (M. africana) as rhizoferrin. The peak obtained for siderophore AB-5 (Aspergillus sp. ABp4) did not show resemblance to any known siderophore, therefore may be an exception.
Insights
This study characterized fungal siderophores, revealing diverse charges and structures. Notably, a novel siderophore from Aspergillus sp. ABp4 was identified, expanding the known diversity of these iron-chelating compounds.
Area of Science:
- Mycology
- Biochemistry
- Organic Chemistry
Background:
- Fungal siderophores are crucial for iron acquisition.
- Understanding siderophore diversity is key to their biotechnological applications.
Purpose of the Study:
- To characterize siderophores from six fungal species.
- To determine their charge, iron-binding nature, amino acid composition, and structure.
Main Methods:
- Electrophoretic mobility analysis for charge determination.
- Ferrated siderophore electrophoresis and colorimetry for Fe(III) binding.
- XAD-2 column chromatography for purification.
- Nuclear Magnetic Resonance (NMR) spectroscopy for structural elucidation.
Main Results:
- Fungal siderophores exhibited acidic, basic, or neutral charges.
- Identified trihydroxamate and dihydroxamate siderophores.
- Determined amino acid compositions including asparagine, histidine, proline, serine, alanine, and valine.
- Identified asperchrome F1 and rhizoferrin, and a novel siderophore from Aspergillus sp. ABp4.
Conclusions:
- Fungal siderophores display significant variation in chemical properties and structure.
- A novel siderophore from Aspergillus sp. ABp4 represents a new class of iron-chelating compounds.
- This research expands the known repertoire of fungal siderophores.
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