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Published on: May 7, 2018
Ultrasensitization: switch-like regulation of cellular signaling by transcriptional induction
Stefan Legewie1, Nils Blüthgen, Reinhold Schäfer
1Institute for Theoretical Biology, Humboldt University, Berlin, Germany. s.legewie@biologie.hu-berlin.de
Abstract:
Cellular signaling networks are subject to transcriptional and proteolytic regulation under both physiological and pathological conditions. For example, the expression of proteins subject to covalent modification by phosphorylation is known to be altered upon cellular differentiation or during carcinogenesis. However, it is unclear how moderate alterations in protein expression can bring about large changes in signal transmission as, for example, observed in the case of haploinsufficiency, where halving the expression of signaling proteins abrogates cellular function. By modeling a fundamental motif of signal transduction, the phosphorylation-dephosphorylation cycle, we show that minor alterations in the concentration of the protein subject to phosphorylation (or the phosphatase) can affect signal transmission in a highly ultrasensitive fashion. This "ultrasensitization" is strongly favored by substrate sequestration on the catalyzing enzymes, and can be observed with experimentally measured enzymatic rate constants. Furthermore, we show that coordinated transcription of multiple proteins (i.e., synexpression) within a protein kinase cascade results in even more pronounced all-or-none behavior with respect to signal transmission. Finally, we demonstrate that ultrasensitization can account for specificity and modularity in the regulation of cellular signal transduction. Ultrasensitization can result in all-or-none cell-fate decisions and in highly specific cellular regulation. Additionally, switch-like phenomena such as ultrasensitization are known to contribute to bistability, oscillations, noise reduction, and cellular heterogeneity.
Insights
Minor changes in protein levels can cause large shifts in cellular signals through ultrasensitization. This mechanism, observed in phosphorylation cycles, explains precise cell regulation and all-or-none cell fate decisions.
Area of Science:
- Cellular and Molecular Biology
- Systems Biology
- Biophysics
Background:
- Cellular signaling networks rely on complex regulatory mechanisms, including transcriptional and proteolytic control.
- Altered protein expression, particularly phosphorylation, is implicated in cellular differentiation and diseases like cancer.
- The quantitative relationship between moderate protein expression changes and significant signal transmission alterations, such as in haploinsufficiency, remains poorly understood.
Purpose of the Study:
- To investigate how minor alterations in protein concentration affect signal transduction within fundamental cellular motifs.
- To elucidate the mechanism of "ultrasensitization" in biological signaling pathways.
- To explore the role of ultrasensitization in cellular decision-making, specificity, and network properties.
Main Methods:
- Mathematical modeling of a core phosphorylation-dephosphorylation cycle.
- Analysis of enzymatic rate constants and substrate sequestration effects.
- Investigation of coordinated gene expression (synexpression) in protein kinase cascades.
Main Results:
- Minor changes in substrate or phosphatase concentration can lead to highly ultrasensitive signal transmission.
- Substrate sequestration significantly enhances ultrasensitization.
- Coordinated transcription of multiple signaling proteins amplifies all-or-none signal transmission behavior.
- Ultrasensitization explains specificity and modularity in cellular regulation.
Conclusions:
- Ultrasensitization is a key mechanism for achieving switch-like signal processing in cellular networks.
- This phenomenon can drive all-or-none cell-fate decisions and fine-tune cellular responses.
- Ultrasensitization contributes to essential network properties like bistability, oscillations, noise reduction, and cellular heterogeneity.
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