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StellaBase: the Nematostella vectensis Genomics Database.
James C Sullivan1, Joseph F Ryan, James A Watson
1Department of Biology, Boston University, 5 Cummington Street, Boston, MA 02215, USA.
Nucleic Acids Research
|December 31, 2005
Summary
StellaBase offers a comprehensive genomics database for the starlet sea anemone (Nematostella vectensis), supporting research in developmental evolution and evolutionary genomics. It provides essential tools and data for the growing Nematostella research community.
Area of Science:
- Marine Biology
- Genomics
- Evolutionary Biology
Background:
- Nematostella vectensis is an emerging model organism in developmental and evolutionary genomics.
- Research in these fields requires accessible genomic data and specialized tools.
Purpose of the Study:
- To introduce StellaBase, a web-based genomics database for Nematostella vectensis.
- To facilitate research by providing access to genomic data and unique research tools.
Main Methods:
- Development of a web-based platform (StellaBase).
- Integration of assembled and predicted genomes, gene libraries, and homology search functions.
- Inclusion of research tools such as genetic stock, primer, literature, and gene expression libraries.
Main Results:
- StellaBase provides query access to the Nematostella genome and gene libraries.
- The database supports gene family evolution studies in early animals.
- Enhanced CnidBase includes genome comparison tools and a framework for integrating new databases.
Conclusions:
- StellaBase is a valuable resource for the Nematostella research community.
- The database supports fundamental questions in developmental evolution and evolutionary genomics.
- StellaBase enhances the capabilities of CnidBase for broader cnidarian research.