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Compaction of single-chain DNA by histone-inspired nanoparticles
Anatoly A Zinchenko1, Kenichi Yoshikawa, Damien Baigl
1Department of Physics, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.
Abstract:
We elaborated a versatile experimental model of chromatin which consists of a single chain of long duplex DNA that interacts with well-defined cationic nanoparticles of various sizes. We found that the DNA compaction by nanoparticles is stepwise and progressive at the single-chain level. It is controlled by the ability of DNA to wrap nanoparticles, which is more efficient for larger particles and, similar to DNA-histone interaction, is optimal at a physiological salt concentration.
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