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Updated: Aug 13, 2026

An Integrated Platform for Genome-wide Mapping of Chromatin States Using High-throughput ChIP-sequencing in Tumor Tissues
Published on: April 5, 2018
Epigenetics provides a new generation of oncogenes and tumour-suppressor genes
1Cancer Epigenetics Laboratory, 3rd Floor, Molecular Pathology Programme, Spanish National Cancer Centre (CNIO), Melchor Fernandez Almagro 3, 28029 Madrid, Spain. mesteller@cnio.es
Abstract:
Cancer is nowadays recognised as a genetic and epigenetic disease. Much effort has been devoted in the last 30 years to the elucidation of the 'classical' oncogenes and tumour-suppressor genes involved in malignant cell transformation. However, since the acceptance that major disruption of DNA methylation, histone modification and chromatin compartments are a common hallmark of human cancer, epigenetics has come to the fore in cancer research. One piece is still missing from the story: are the epigenetic genes themselves driving forces on the road to tumorigenesis? We are in the early stages of finding the answer, and the data are beginning to appear: knockout mice defective in DNA methyltransferases, methyl-CpG-binding proteins and histone methyltransferases strongly affect the risk of cancer onset; somatic mutations, homozygous deletions and methylation-associated silencing of histone acetyltransferases, histone methyltransferases and chromatin remodelling factors are being found in human tumours; and the first cancer-prone families arising from germline mutations in epigenetic genes, such as hSNF5/INI1, have been described. Even more importantly, all these 'new' oncogenes and tumour-suppressor genes provide novel molecular targets for designed therapies, and the first DNA-demethylating agents and inhibitors of histone deacetylases are reaching the bedside of patients with haematological malignancies.
Insights
Epigenetic genes, including DNA methyltransferases and histone modifiers, are increasingly recognized as drivers of cancer. Mutations in these genes can increase cancer risk and offer new therapeutic targets.
Area of Science:
- Oncology
- Epigenetics
- Molecular Biology
Background:
- Cancer is increasingly understood as a genetic and epigenetic disease.
- While oncogenes and tumor suppressors are well-studied, the role of epigenetic alterations in cancer is a growing focus.
- Epigenetic disruptions, including DNA methylation and histone modification, are hallmarks of human cancers.
Purpose of the Study:
- To investigate whether epigenetic genes themselves are driving forces in tumorigenesis.
- To explore the link between epigenetic gene dysfunction and cancer development.
- To identify novel molecular targets for cancer therapies based on epigenetic alterations.
Main Methods:
- Analysis of knockout mice models with defects in DNA methyltransferases, methyl-CpG-binding proteins, and histone methyltransferases.
- Examination of human tumors for somatic mutations, deletions, and silencing of epigenetic regulators like histone acetyltransferases, histone methyltransferases, and chromatin remodelers.
- Investigation of cancer-prone families with germline mutations in epigenetic genes, such as hSNF5/INI1.
Main Results:
- Defects in epigenetic genes in mice significantly impact cancer onset risk.
- Human tumors exhibit alterations in epigenetic genes, including mutations and silencing.
- Germline mutations in epigenetic genes are linked to inherited cancer predisposition.
Conclusions:
- Epigenetic genes play a crucial role in cancer development and can act as oncogenes or tumor suppressors.
- These findings highlight novel molecular targets for cancer treatment.
- Epigenetic therapies, such as DNA-demethylating agents and histone deacetylase inhibitors, show promise in clinical settings, particularly for hematological malignancies.
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