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Updated: May 5, 2026

Quantitative Polymerase Chain Reaction-based Analyses of Murine Intestinal Microbiota After Oral Antibiotic Treatment
Published on: November 17, 2018
Small intestinal bacterial overgrowth: roles of antibiotics, prebiotics, and probiotics
Eamonn M M Quigley1, Rodrigo Quera
1Alimentary Pharmabiotic Centre, Department of Medicine, National University of Ireland, Cork, Ireland. e.quigley@ucc.ie
Abstract:
Small intestinal bacterial overgrowth is common in intestinal failure. Its occurrence relates to alterations in intestinal anatomy, motility, and gastric acid secretion. Its presence may contribute to symptoms, mucosal injury, and malnutrition. Relationships between bacterial overgrowth and systemic sepsis are of potential importance in the intestinal failure patient because the direct translocation of bacteria across the intestinal epithelium may contribute to systemic sepsis: a phenomenon that has been well established in experimental animal models. The accurate diagnosis of bacterial overgrowth continues to present a number of challenges in clinical practice and especially so among patients with intestinal failure. The management of patients with bacterial overgrowth remains, for the most part, primarily empiric and comprises antibiotic therapy and correction of any associated nutritional deficiencies. Although evidence from experimental animal studies consistently indicates that probiotics exert barrier-enhancing, antibacterial, immune-modulating, and anti-inflammatory effects, which all could be benefits in small intestinal bacterial overgrowth and intestinal failure, their role in human beings remains to be evaluated adequately.
Insights
Small intestinal bacterial overgrowth (SIBO) is common in intestinal failure, potentially causing sepsis. While probiotics show promise in animal models, their effectiveness in humans with SIBO requires further evaluation.
Area of Science:
- Gastroenterology
- Microbiology
- Clinical Nutrition
Background:
- Small intestinal bacterial overgrowth (SIBO) is prevalent in patients with intestinal failure.
- SIBO is linked to anatomical, motility, and secretory changes in the gut.
- It can exacerbate symptoms, mucosal damage, and malnutrition in intestinal failure.
Purpose of the Study:
- To review the challenges in diagnosing SIBO in intestinal failure.
- To discuss current management strategies for SIBO in this patient population.
- To explore the potential role of probiotics in managing SIBO and intestinal failure.
Main Methods:
- Literature review focusing on SIBO in intestinal failure.
- Analysis of diagnostic challenges and current therapeutic approaches.
- Evaluation of experimental evidence for probiotic efficacy.
Main Results:
- SIBO diagnosis in intestinal failure presents significant clinical challenges.
- Current management relies on empirical antibiotic therapy and nutritional support.
- Animal studies suggest probiotics may offer benefits, but human data is lacking.
Conclusions:
- Accurate diagnosis and effective management of SIBO in intestinal failure remain critical unmet needs.
- Probiotics demonstrate potential therapeutic benefits based on preclinical data.
- Further clinical trials are essential to validate the role of probiotics in human SIBO and intestinal failure.
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