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Updated: Aug 11, 2026

Laser-capture Microdissection of Human Prostatic Epithelium for RNA Analysis
Published on: November 26, 2015
Gene promoter methylation in prostate tumor-associated stromal cells
Jeffrey A Hanson1, John W Gillespie, Amelia Grover
1Genetics Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Background:
Gene expression can be silenced through the methylation of specific sites in the promoter region. This mechanism of gene silencing has an important role in the carcinogenesis of prostate and other cancers. Although tumor-associated stromal cells also exhibit changes in gene expression, promoter methylation has not been described in these cells.
Methods:
Tumor epithelia, tumor-associated stroma and normal epithelia, and stroma adjacent to tumor tissues were isolated from whole-mount prostatectomy specimens (two per patient) of patients (n = 5) with localized prostate cancer and from normal epithelia and stroma from benign prostate hyperplasia specimens (two per patient) from men (n = 5) without prostate cancer by using laser capture microdissection or expression microdissection. The methylation status of three genes important in prostate carcinogenesis, GSTP1, RARbeta2, and CD44, were evaluated using quantitative methylation-sensitive polymerase chain reaction.
Results:
GSTP1 and RARbeta2 were methylated in the tumor epithelium of all five prostate cancer patients and in the tumor-associated stroma in four of the five patients. CD44 was methylated in the tumor epithelium from four of the five patients but not in the tumor stroma. GSTP1 and RARbeta2 were methylated in normal epithelium of two and four patients, respectively, and in normal stroma of one and two patients, respectively, that were isolated from regions adjacent to the tumors and may have resulted from a tumor-field effect; CD44 methylation was not observed in normal epithelium or stroma. In contrast, normal epithelia and stroma from benign prostate hyperplasia specimens showed no promoter methylation in GSTP1, RARbeta2, or CD44.
Conclusions:
The observation of promoter methylation in the non-neoplastic cells of the prostate tumor microenvironment may advance our understanding of prostate cancer development and progression and lead to new diagnostic and prognostic markers and therapeutic targets.
Insights
Promoter methylation, a gene silencing mechanism, was found in tumor-associated stroma of prostate cancer patients. This finding in non-neoplastic cells could lead to new diagnostic and therapeutic strategies for prostate cancer.
Area of Science:
- Oncology
- Molecular Biology
- Epigenetics
Background:
- Gene silencing via promoter methylation is crucial in cancer development.
- While common in tumor cells, promoter methylation in tumor-associated stroma was previously undescribed.
- Prostate cancer involves complex interactions within the tumor microenvironment.
Purpose of the Study:
- To investigate promoter methylation in tumor-associated stroma of prostate cancer.
- To compare methylation patterns in tumor epithelia, stroma, and normal prostate tissues.
- To identify potential epigenetic alterations in the non-neoplastic prostate microenvironment.
Main Methods:
- Laser capture microdissection to isolate distinct prostate tissue compartments (epithelia, stroma) from cancer and benign specimens.
- Quantitative methylation-sensitive polymerase chain reaction (PCR) to assess the methylation status of GSTP1, RARbeta2, and CD44 genes.
- Analysis of methylation in tumor epithelia, tumor-associated stroma, normal epithelia/stroma adjacent to tumors, and normal tissues from benign hyperplasia.
Main Results:
- GSTP1 and RARbeta2 showed methylation in tumor epithelia and, notably, in the tumor-associated stroma of most prostate cancer patients.
- CD44 methylation was detected in tumor epithelia but not in the associated stroma.
- Normal tissues adjacent to tumors exhibited some methylation (potentially a tumor-field effect), while tissues from benign hyperplasia showed no promoter methylation for the studied genes.
Conclusions:
- Promoter methylation occurs in non-neoplastic stromal cells within the prostate tumor microenvironment.
- These findings expand the understanding of epigenetic alterations in prostate cancer progression.
- The presence of methylation in stromal cells suggests potential utility as novel diagnostic or prognostic biomarkers and therapeutic targets.
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