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Updated: Aug 11, 2026

Computational Prediction of Amino Acid Preferences of Potentially Multispecific Peptide-Binding Domains Involved in Protein-Protein Interactions
Published on: January 26, 2024
Optimal target search on a fast-folding polymer chain with volume exchange
Michael A Lomholt1, Tobias Ambjörnsson, Ralf Metzler
1NORDITA, Blegdamsvej 17, Copenhagen Ø, Denmark.
Abstract:
We study the search process of a target on a rapidly folding polymer ("DNA") by an ensemble of particles ("proteins"), whose search combines 1D diffusion along the chain, Lévy type diffusion mediated by chain looping, and volume exchange. A rich behavior of the search process is obtained with respect to the physical parameters, in particular, for the optimal search.
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