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Yeast As a Chassis for Developing Functional Assays to Study Human P53
Published on: August 4, 2019
Differentially regulated micro-RNAs and actively translated messenger RNA transcripts by tumor suppressor p53 in
Yaguang Xi1, Reut Shalgi, Oystein Fodstad
1University of South Alabama-Cancer Research Institute, Mobile, Alabama and Weizmann Institute of Science, Rehovot, Israel.
Purpose:
The aim of this study was to investigate the role of p53 in regulating micro-RNA (miRNA) expression due to its function as a transcription factor. In addition, p53 may also affect other cellular mRNA gene expression at the translational level either via its mediated miRNAs or due to its RNA-binding function.
Experimental Design:
The possible interaction between p53 and miRNAs in regulating gene expression was investigated using human colon cancer HCT-116 (wt-p53) and HCT-116 (null-p53) cell lines. The effect of p53 on the expression of miRNAs was investigated using miRNA expression array and real-time quantitative reverse transcription-PCR analysis.
Results:
Our investigation indicated that the expression levels of a number of miRNAs were affected by wt-p53. Down-regulation of wt-p53 via small interfering RNA abolished the effect of wt-p53 in regulating miRNAs in HCT-116 (wt-p53) cells. Global sequence analysis revealed that over 46% of the 326 miRNA putative promoters contain potential p53-binding sites, suggesting that some of these miRNAs were potentially regulated directly by wt-p53. In addition, the expression levels of steady-state total mRNAs and actively translated mRNA transcripts were quantified by high-density microarray gene expression analysis. The results indicated that nearly 200 cellular mRNA transcripts were regulated at the posttranscriptional level, and sequence analysis revealed that some of these mRNAs may be potential targets of miRNAs, including translation initiation factor eIF-5A, eIF-4A, and protein phosphatase 1.
Conclusion:
To the best of our knowledge, this is the first report demonstrating that wt-p53 and miRNAs interact in influencing gene expression and providing insights of how p53 regulates genes at multiple levels via unique mechanisms.
Insights
The tumor suppressor p53 influences micro-RNA (miRNA) expression and impacts gene regulation at multiple levels. This study reveals novel interactions between p53 and miRNAs in controlling cellular gene expression.
Area of Science:
- Molecular Biology
- Gene Regulation
- Cancer Biology
Background:
- The p53 protein is a critical tumor suppressor involved in various cellular processes.
- MicroRNAs (miRNAs) are small non-coding RNAs that regulate gene expression post-transcriptionally.
- Understanding the interplay between p53 and miRNAs is crucial for deciphering complex gene regulatory networks in cancer.
Purpose of the Study:
- To investigate the role of p53 as a transcription factor in regulating miRNA expression.
- To explore p53's potential effects on cellular mRNA gene expression at the translational level, mediated by miRNAs or its RNA-binding function.
Main Methods:
- Utilized human colon cancer cell lines HCT-116 (wild-type p53) and HCT-116 (null-p53).
- Employed miRNA expression arrays and real-time quantitative reverse transcription-PCR to assess miRNA expression.
- Conducted high-density microarray gene expression analysis to quantify mRNA transcripts.
Main Results:
- Wild-type p53 significantly affected the expression levels of numerous miRNAs.
- Over 46% of miRNA promoters contained potential p53-binding sites, indicating direct regulation.
- Nearly 200 cellular mRNA transcripts were regulated post-transcriptionally, with some identified as potential miRNA targets.
Conclusions:
- This study provides the first evidence of an interaction between wild-type p53 and miRNAs in gene expression regulation.
- Demonstrates that p53 regulates genes through unique mechanisms at multiple levels.
- Highlights the intricate relationship between p53, miRNAs, and mRNA expression in cellular processes.
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