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The evolution and diversification of Dicers in plants
Rogerio Margis1, Adriana F Fusaro, Neil A Smith
1CSIRO Plant Industry, P.O. Box 1600, Canberra, ACT 2601, Australia.
FEBS Letters
|April 28, 2006
Summary
Plants possess multiple Dicer-like genes, crucial for microRNA production and development. This study reveals a core set of four Dicer types evolved early in plant evolution, with a fifth type emerging in monocots.
Area of Science:
- Molecular Biology
- Plant Genomics
- Developmental Biology
Background:
- MicroRNAs regulate developmental transitions in multicellular organisms.
- Dicer enzymes generate microRNAs.
- Gene copy number for Dicer-like proteins varies across kingdoms (insects, fungi, animals, plants).
Purpose of the Study:
- To investigate the diversity and evolutionary history of Dicer-like (DCL) genes in plants.
- To determine the ancestral DCL gene set in plants.
- To understand the evolutionary trajectory of DCL genes in monocots and dicots.
Main Methods:
- Comparative genomic analysis of Dicer-like genes in poplar and rice.
- Phylogenetic analysis to infer evolutionary relationships.
- Identification of conserved Dicer-like gene families.
Main Results:
- Arabidopsis has four Dicer-like genes.
- Poplar and rice genomes contain five and six Dicer-like genes, respectively.
- A core set of four Dicer-like gene types predates the divergence of monocots and dicots but post-dates the split from green algae.
- Evidence suggests a fifth Dicer-like gene type evolved specifically in monocots.
Conclusions:
- Plants possess an expanded repertoire of Dicer-like genes compared to many other eukaryotes.
- The evolution of a basic set of four Dicer-like genes occurred early in land plant evolution.
- Monocots have undergone further Dicer-like gene diversification.
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