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Updated: Aug 8, 2026

Rapid Generation of Amyloid from Native Proteins In vitro
Published on: December 5, 2013
Apomyoglobin reveals a random-nucleation mechanism in amyloid protofibril formation
Marcus Fändrich1, Giorgia Zandomeneghi, Mark R H Krebs
1Institut für Molekulare Biotechnologie (IMB), Beutenbergstrasse 11, Postfach 100 813, D-07708 Jena, Germany. fandrich@imb-jena.de
Abstract:
Protofibrils (PFs) represent the earliest fibrillar species that occur in the course of amyloid fibril formation. Using apomyoglobin, we report here that PFs arise from a multi-step reaction and that they are preceded by an ensemble of non-fibrillar particles (NFPs). These intermediate aggregates encompass nascent elements of amyloid structure and can act as seeds in PF formation. Taken together with the observation that PFs often protrude from NFPs, our data suggest that PFs form by a random nucleation mechanism in which the polypeptide chains sample many different aggregated conformations. Once the appropriate structural characteristics are acquired, PFs are formed by addition of further polypeptide chains.
Insights
Protofibrils (PFs) form through a multi-step process, originating from non-fibrillar particles (NFPs). These early amyloid structures develop via random nucleation and subsequent polypeptide addition.
Area of Science:
- Biochemistry
- Structural Biology
- Biophysics
Background:
- Amyloid fibril formation is implicated in various neurodegenerative diseases.
- Protofibrils (PFs) are early-stage aggregates in this process.
- Understanding the initial steps of fibril formation is crucial.
Purpose of the Study:
- To elucidate the formation mechanism of protofibrils (PFs).
- To characterize the intermediate species preceding PF formation.
- To investigate the role of non-fibrillar particles (NFPs) in PF assembly.
Main Methods:
- Utilized apomyoglobin as a model system.
- Analyzed the multi-step reaction pathway of fibril formation.
- Observed the structural relationship between NFPs and PFs.
Main Results:
- Protofibrils (PFs) arise from a multi-step reaction.
- Non-fibrillar particles (NFPs) precede PF formation.
- NFPs contain nascent amyloid structures and act as seeds for PFs.
- PFs appear to form via random nucleation and subsequent addition of polypeptide chains.
Conclusions:
- PF formation is a complex process initiated by NFPs.
- Random nucleation and templated growth contribute to PF assembly.
- This study provides insights into the early stages of amyloidogenesis.
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