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Related Experiment Videos

Agents in bioinformatics, computational and systems biology.

Emanuela Merelli1, Giuliano Armano, Nicola Cannata

  • 1Dipartimento di Matematica e Informatica Via Madonna delle Carceri 9 62032 Camerino, Italy. emanuela.merelli@unicam.it

Briefings in Bioinformatics
|June 15, 2006
PubMed
Summary

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Agent technologies and multi-agent systems are emerging in bioinformatics. Collaborations between agent and bioinformatics communities are developing novel agent-based computational frameworks for data analysis and systems biology.

Area of Science:

  • Bioinformatics
  • Computational Biology
  • Agent Technology
  • Multi-Agent Systems

Background:

  • Emergence of agent technologies and multi-agent systems in bioinformatics.
  • Formation of the Working Group on Agents in Bioinformatics (BIOAGENTS) in 2004.
  • Initiation of collaborations between agent and bioinformatics communities.

Framework:

  • Development of agent-based computational frameworks.
  • Application to data analysis and management in bioinformatics.
  • Application to systems modeling and simulation in computational and systems biology.

Implementation:

  • Summary and discussion of resulting applications and integrated tools.
  • Contextualization within the current state-of-the-art.

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  • Exploration of future challenges and research directions.
  • Implications:

    • Potential for bio-conceptual languages in agent-based simulation.
    • Development of bio-ontology-based declarative languages for information agents.
    • Adoption of agents for computational grids and enhanced biological data processing.