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Updated: Aug 6, 2026

Purification of Ubiquitinated p53 Proteins from Mammalian Cells
Published on: March 21, 2022
A second p53 binding site in the central domain of Mdm2 is essential for p53 ubiquitination
Jianhong Ma1, John D Martin, Hong Zhang
1Enzymology & Mechanistic Pharmacology, GlaxoSmithKline, 1250 South Collegeville Road, Collegeville, Pennsylvania 19426, USA.
Abstract:
Mdm2 negatively regulates p53 by inhibiting its transcriptional activity and promoting its degradation by functioning as an E3 ubiquitin ligase. The primary p53 binding site on mdm2 is located in its N-terminal domain. Through binding to p53 at its N-terminal transactivation domain, mdm2 directly blocks the transcriptional activation function of p53. We discovered that truncated mdm2 protein constructs without the N-terminal p53 binding domain are at least as active as full-length mdm2 in catalyzing p53 ubiquitination. Furthermore, the deletion of the central acidic domain significantly reduces the E3 ligase activity of mdm2 toward p53. We have also performed GST pull-down experiments to probe the direct binding of various mdm2 domain constructs toward full length p53 and found that mdm2 constructs without the N-terminal p53 binding domain retain the ability to bind to p53. Our kinetic and binding data localize the second p53 binding site between amino acids 211 and 361, including the acidic domain and the zinc finger region. Our work, consistent with other reports, suggests that the p53 tetramer interacts with at least two sites on mdm2. Although the interaction between the N-termini of mdm2 and p53 blocks the transactivation activity of p53, the interaction between the central domain of mdm2 and the core domain of p53 is critical for the ubiquitination and degradation of p53. This second mdm2-p53 interaction site represents an alternative target for small molecule modulators of the mdm2-p53 pathway.
Insights
Mdm2 regulates the tumor suppressor p53 through two binding sites. A second site in mdm2
Area of Science:
- Molecular Biology
- Cancer Research
- Protein Interactions
Background:
- Mdm2 (mouse double minute 2 homolog) is a key negative regulator of the tumor suppressor p53.
- Mdm2 inhibits p53 transcriptional activity and promotes its degradation via E3 ubiquitin ligase activity.
- The N-terminal domain of mdm2 contains the primary p53 binding site, blocking p53's transactivation function.
Purpose of the Study:
- To investigate the role of different mdm2 domains in p53 regulation.
- To identify and characterize alternative p53 binding sites on mdm2.
- To explore new therapeutic targets within the mdm2-p53 interaction pathway.
Main Methods:
- Truncated mdm2 protein constructs were used to assess E3 ligase activity.
- GST pull-down experiments were performed to analyze mdm2-p53 binding.
- Kinetic and binding data were utilized to map p53 interaction sites on mdm2.
Main Results:
- Truncated mdm2 lacking the N-terminal p53 binding domain retained significant E3 ligase activity.
- Deletion of the central acidic domain markedly reduced mdm2's E3 ligase activity toward p53.
- A second p53 binding site was localized to mdm2 amino acids 211-361 (acidic domain and zinc finger region).
Conclusions:
- p53 interacts with mdm2 at at least two distinct sites.
- The N-terminal interaction inhibits p53 transactivation, while the central domain interaction is crucial for p53 ubiquitination and degradation.
- The newly identified second mdm2-p53 interaction site offers a potential target for therapeutic intervention in cancer.
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