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The Stanford Microarray Database: a user's guide.

Jeremy Gollub1, Catherine A Ball, Gavin Sherlock

  • 1Department of Biochemistry, Stanford University Medical School, Stanford, CA, USA.

Methods in Molecular Biology (Clifton, N.J.)
|August 5, 2006
PubMed
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The Stanford Microarray Database (SMD) offers public access to extensive DNA microarray data. This guide details tools for data analysis, deposition, and sharing, empowering researchers and students.

Area of Science:

  • Bioinformatics
  • Genomics
  • Molecular Biology

Background:

  • The Stanford Microarray Database (SMD) is a crucial resource for DNA microarray research.
  • It hosts a substantial volume of experimental data for public access and scientific inquiry.

Purpose of the Study:

  • To provide a comprehensive guide on utilizing the Stanford Microarray Database (SMD).
  • To enable researchers and students to effectively search, retrieve, analyze, and interpret gene expression data.
  • To introduce advanced tools for data deposition, annotation, and sharing for registered users.

Main Methods:

  • Description of primary tools for data searching, browsing, and retrieval within SMD.
  • Explanation of analytical functionalities available for gene expression and other experimental data.

Related Experiment Videos

  • Overview of specialized tools for data deposition, annotation, and sharing for registered users.

    • Main Results:

    • Researchers and students can effectively examine and analyze a large body of gene expression data using SMD tools.
    • Registered users gain access to enhanced functionalities for data management and collaborative analysis.
    • SMD is available for local installation, offering flexibility for institutional use.

    Conclusions:

    • The Stanford Microarray Database (SMD) serves as a valuable, publicly accessible platform for genomic research.
    • The provided tools facilitate comprehensive data analysis and management, supporting the scientific community.
    • SMD supports both public data exploration and advanced, registered-user-specific data handling and sharing.