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Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Founder mutation Arg485Pro led to recurrent compound heterozygous GGCX genotypes in two German patients with VKCFD
Simone Rost1, Christof Geisen, Andreas Fregin
1Institute of Human Genetics, Biocenter, Am Hubland, University Würzburg, Würzburg, Germany.
Insights
This study identifies two new mutations in the GGCX gene causing vitamin-K-dependent coagulation factor deficiency (VKCFD type 1). One mutation, Arg485Pro, is a founder mutation in the German population.
Area of Science:
- Genetics
- Hematology
- Biochemistry
Background:
- Congenital combined deficiency of vitamin-K-dependent coagulation factors (VKCFD) is a rare inherited bleeding disorder.
- It results from mutations in genes responsible for vitamin K metabolism, specifically the gamma-glutamyl carboxylase (GGCX) gene (VKCFD type 1) or the vitamin K epoxide reductase gene (VKCFD type 2).
Observation:
- Four distinct GGCX gene mutations have been documented in VKCFD type 1 patients.
- This report details a fourth patient with VKCFD type 1, presenting compound heterozygous missense mutations in the GGCX gene: His404Pro and Arg485Pro.
Findings:
- The His404Pro mutation is novel, while Arg485Pro was previously identified in another German patient.
- Haplotype analysis indicates that Arg485Pro is a founder mutation, suggesting its presence at a low frequency within the German population.
- This founder effect likely explains the German origin of the two known compound heterozygous VKCFD type 1 patients.
Implications:
- The identification of novel GGCX mutations expands the known mutational spectrum for VKCFD type 1.
- Understanding the genetic basis and population frequency of these mutations is crucial for diagnosis and genetic counseling.
- The discovery of a founder mutation in the German population highlights the importance of population-specific genetic studies in rare diseases.
Abstract:
Congenital combined deficiency of the vitamin-K-dependent coagulation factors (VKCFD) represents a rare autosomal recessive inherited bleeding disorder caused by mutations in either the gamma-glutamyl carboxylase gene (VKCFD type 1) or the vitamin K epoxide reductase gene (VKCFD type 2). Four different mutations of the gamma-glutamyl carboxylase gene (GGCX) have so far been reported in three unrelated patients with VKCFD type 1. Here we report on a fourth patient who presented with two compound heterozygous missense mutations of the GGCX gene, His404Pro and Arg485Pro. The His404Pro mutation has not been described previously, while the Arg485Pro mutation has been reported in another compound heterozygous VKCFD type 1 patient from Germany. Most interestingly, haplotype analysis revealed that Arg485Pro is due to a founder mutation, suggesting that this mutation is present in the German population at some low frequency. The founder mutation explains that the only two compound heterozygous VKCFD type 1 patients known today originated from Germany.
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