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Identification of Cyclin-dependent Kinase 1 Specific Phosphorylation Sites by an In Vitro Kinase Assay
Published on: May 3, 2018
The Chk1-mediated S-phase checkpoint targets initiation factor Cdc45 via a Cdc25A/Cdk2-independent mechanism
Peijun Liu1, Laura R Barkley, Tovah Day
1Department of Genetics and Genomics, Boston University School of Medicine, Boston, Massachusetts 02118, USA.
Abstract:
DNA damage induced by the carcinogen benzo[a]pyrene dihydrodiol epoxide (BPDE) induces a Chk1-dependent S-phase checkpoint. Here, we have investigated the molecular basis of BPDE-induced S-phase arrest. Chk1-dependent inhibition of DNA synthesis in BPDE-treated cells occurred without detectable changes in Cdc25A levels, Cdk2 activity, or Cdc7/Dbf4 interaction. Overexpression studies showed that Cdc25A, cyclin A/Cdk2, and Cdc7/Dbf4 were not rate-limiting for DNA synthesis when the BPDE-induced S-phase checkpoint was active. To investigate other potential targets of the S-phase checkpoint, we tested the effects of BPDE on the chromatin association of DNA replication factors. The levels of chromatin-associated Cdc45 (but not soluble Cdc45) were reduced concomitantly with BPDE-induced Chk1 activation and inhibition of DNA synthesis. The chromatin association of Mcm7, Mcm10, and proliferating cell nuclear antigen was unaffected by BPDE treatment. However, the association between Mcm7 and Cdc45 in the chromatin fraction was inhibited in BPDE-treated cells. Chromatin immunoprecipitation analyses demonstrated reduced association of Cdc45 with the beta-globin origin of replication in BPDE-treated cells. The inhibitory effects of BPDE on DNA synthesis, Cdc45/Mcm7 associations, and interactions between Cdc45 and the beta-globin locus were abrogated by the Chk1 inhibitor UCN-01. Taken together, our results show that the association between Cdc45 and Mcm7 at origins of replication is negatively regulated by Chk1 in a Cdk2-independent manner. Therefore, Cdc45 is likely to be an important target of the Chk1-mediated S-phase checkpoint.
Insights
The carcinogen benzo[a]pyrene dihydrodiol epoxide (BPDE) triggers a Chk1-dependent S-phase checkpoint, inhibiting DNA synthesis by reducing Cdc45 and Mcm7 association at replication origins. This Chk1 regulation of Cdc45 is independent of Cdk2.
Area of Science:
- Molecular Biology
- Cell Cycle Regulation
- DNA Damage Response
Background:
- Carcinogens like benzo[a]pyrene dihydrodiol epoxide (BPDE) induce DNA damage, activating cellular checkpoints.
- The S-phase checkpoint prevents cells from replicating damaged DNA, crucial for genomic stability.
Purpose of the Study:
- To elucidate the molecular mechanisms underlying BPDE-induced S-phase arrest.
- To identify specific targets of the Chk1 kinase in the DNA damage response pathway.
Main Methods:
- Investigated BPDE effects on DNA synthesis, cell cycle regulators (Cdc25A, Cdk2, Cdc7/Dbf4), and DNA replication factors.
- Assessed chromatin association of replication factors (Cdc45, Mcm7, Mcm10, PCNA) using biochemical assays.
- Performed chromatin immunoprecipitation (ChIP) to analyze protein-DNA interactions at replication origins.
- Utilized Chk1 inhibitor UCN-01 to determine the role of Chk1 in BPDE-induced effects.
Main Results:
- BPDE treatment inhibited DNA synthesis via a Chk1-dependent pathway without altering Cdc25A, Cdk2 activity, or Cdc7/Dbf4 interaction.
- BPDE reduced chromatin-associated Cdc45 levels and inhibited the association between Cdc45 and Mcm7 at replication origins.
- Chromatin immunoprecipitation showed decreased Cdc45 binding to the beta-globin origin of replication.
- Inhibition of DNA synthesis and altered protein associations by BPDE were reversed by the Chk1 inhibitor UCN-01.
Conclusions:
- Chk1 negatively regulates the association between Cdc45 and Mcm7 at replication origins in a Cdk2-independent manner.
- Cdc45 is identified as a key target of the Chk1-mediated S-phase checkpoint during DNA damage response.
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