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Updated: Aug 6, 2026

Identification of Cyclin-dependent Kinase 1 Specific Phosphorylation Sites by an In Vitro Kinase Assay
Published on: May 3, 2018
Emi1 stably binds and inhibits the anaphase-promoting complex/cyclosome as a pseudosubstrate inhibitor
Julie J Miller1, Matthew K Summers, David V Hansen
1Program in Molecular Pharmacology, Stanford University School of Medicine, Stanford, California 94305, USA.
Abstract:
The periodic destruction of mitotic cyclins is triggered by the activation of the anaphase-promoting complex/cyclosome (APC/C) in mitosis. Although the ability of the APC/C to recognize destruction box (D-box) substrates oscillates throughout the cell cycle, the mechanism regulating APC/C binding to D-box substrates remains unclear. Here, we show that the APC/C inhibitor Emi1 tightly binds both the APC/C and its Cdh1 activator, binds to the D-box receptor site on the APC/C(Cdh1), and competes with APC/C substrates for D-box binding. Emi1 itself contains a conserved C-terminal D-box, which provides APC/C-binding affinity, and a conserved zinc-binding region (ZBR), which antagonizes APC/C E3 ligase activity independent of tight APC binding. Mutation of the ZBR converts Emi1 into a D-box-dependent APC/C substrate. The identification of a direct Emi1-APC/C complex further explains how Emi1 functions as a stabilizing factor for cyclin accumulation and the need to destroy Emi1 for APC/C activation in mitosis. The combination of a degron/E3 recognition site and an anti-ligase function in Emi1 suggests a general model for how E3 substrates evolve to become pseudosubstrate inhibitors.
Insights
The anaphase-promoting complex/cyclosome (APC/C) inhibitor Emi1 directly binds APC/C, blocking substrate degradation. Emi1
Area of Science:
- Cell Biology
- Molecular Biology
- Biochemistry
Background:
- Mitotic cyclin destruction, regulated by the anaphase-promoting complex/cyclosome (APC/C), is crucial for cell cycle progression.
- The precise mechanism governing APC/C binding to its destruction box (D-box) substrates remains incompletely understood.
Purpose of the Study:
- To elucidate the mechanism by which the APC/C inhibitor Emi1 regulates APC/C activity.
- To investigate the structural basis of Emi1-APC/C interaction and its functional consequences.
Main Methods:
- Biochemical assays to study protein-protein interactions.
- Site-directed mutagenesis to analyze the function of Emi1 domains.
- Analysis of APC/C-Emi1 complex formation.
Main Results:
- Emi1 directly binds to the APC/C(Cdh1) complex, competing with D-box substrates for binding.
- Emi1 possesses a D-box for APC/C binding and a zinc-binding region (ZBR) that inhibits APC/C ligase activity.
- Mutation of the ZBR renders Emi1 a substrate of the APC/C, highlighting its role in regulating APC/C activity.
Conclusions:
- Emi1 acts as a pseudosubstrate inhibitor of the APC/C, stabilizing cyclins by blocking substrate degradation.
- The dual function of Emi1 (substrate binding and activity inhibition) provides a model for the evolution of E3 substrate inhibitors.
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