Apoptosome: a platform for the activation of initiator caspases

Q Bao1, Y Shi

  • 1Department of Molecular Biology, Lewis Thomas Laboratory, Princeton University, Princeton, NJ 08544, USA.

Insights

Apoptosomes activate initiator caspases, crucial for apoptosis. Recent studies reveal insights into apoptosome assembly and function, yet precise caspase activation mechanisms remain under investigation.

Area of Science:

  • Cell Biology
  • Molecular Biology
  • Biochemistry

Background:

  • Apoptosomes are crucial adaptor protein complexes initiating apoptosis by activating initiator caspases.
  • Different organisms utilize distinct apoptosome complexes, including Apaf-1 in mammals, Dark/Hac-1/Dapaf-1 in Drosophila, and CED-4 in C. elegans.

Purpose of the Study:

  • To review recent biochemical and structural findings on apoptosome assembly and function.
  • To discuss proposed models for initiator caspase activation by apoptosomes.
  • To explore the role of conformational changes in caspase activation.

Main Methods:

  • Literature review of biochemical and structural studies on apoptosomes.
  • Analysis of proposed models for caspase activation: induced proximity and proximity-driven dimerization.
  • Examination of the induced conformation model for active site changes.

Main Results:

  • Significant insights into apoptosome assembly and function have been gained.
  • Several models, including induced proximity and proximity-driven dimerization, attempt to explain caspase activation.
  • The induced conformation model suggests direct interaction or homo-oligomerization facilitates active site changes.

Conclusions:

  • While apoptosome structure and function are increasingly understood, the exact mechanisms of initiator caspase activation remain unclear.
  • Models like induced proximity and induced conformation provide frameworks for understanding caspase activation.
  • Further research is needed to elucidate the precise molecular events linking apoptosome assembly to caspase activation.

Related Concept Videos

The Intrinsic Apoptotic Pathway01:31

The Intrinsic Apoptotic Pathway

Internal cellular stress, such as cellular injury or hypoxia, triggers intrinsic apoptosis. The B-cell lymphoma 2 (Bcl-2) family of proteins are the primary regulators of the intrinsic apoptotic pathway. For example, during DNA damage, checkpoint proteins, such as Ataxia Telangiectasia Mutated (ATM protein) and Checkpoints Factor-2 (Chk2) proteins, are activated. These proteins phosphorylate p53 which further activates pro-apoptotic proteins, such as Bax, Bak, PUMA, and Noxa, and inhibits...
Caspases01:24

Caspases

Caspase, a family of cysteine proteases, serve as effectors in apoptosis. The ced3 gene in C.elegans was first identified to be involved in apoptosis. This gene encodes the ced-3 caspase that is similar to the interleukin-1-beta converting enzyme or ICE in mammals. In addition to apoptosis, caspases also function in the inflammatory response. Inflammatory caspases are essential in activating pro-inflammatory cytokines that recruit immune cells and block the replication of pathogens inside cells.
The Extrinsic Apoptotic Pathway01:17

The Extrinsic Apoptotic Pathway

The extrinsic apoptotic pathway is initiated when extracellular death-inducing signals, such as specific cytokines, activate the death receptors expressed on the cell surface. The immune cells involved in this pathway are natural killer cells (NK cells) and cytotoxic T-lymphocytes. NK cells are critical in innate immune response, while cytotoxic T-lymphocytes are associated with adaptive immune response. These cells recognize specific receptors expressed on the altered cells and activate...
Apoptosis01:30

Apoptosis

Apoptosis is a combination of two Greek words, 'apo' and 'ptosis,' meaning separation and falling off, respectively. Hippocrates used this word to describe gangrene, which was caused due to bandaging of fractured bones. Apoptosis was distinguished from necrosis in 1970 when John Kerr reported observations of morphological changes occurring during apoptosis. During one experiment, he observed that the disruption of blood supply to the liver tissue resulted in a size reduction of the tissue.
Autophagic Cell Death01:18

Autophagic Cell Death

Christian de Duve discovered “autophagy,” a process in which cellular components are engulfed by membrane-bound organelles called autophagosomes. The autophagosomes then fuse with lysosomes to digest the enclosed contents. Autophagy is generally activated in cells to prevent cell death. However, cell death is triggered when the damage is beyond repair.
Autophagy and Apoptosis
Autophagy can activate apoptosis. In normal conditions, the autophagy activating protein Beclin-1 and pro-apoptotic...
Phagocytosis of Apoptotic Cells01:17

Phagocytosis of Apoptotic Cells

Cells undergoing apoptosis form apoptotic bodies that must be removed immediately to prevent inflammation, autoimmune diseases, and necrosis. Phagocytosis is carried out by professional phagocytes such as macrophages or  immature dendritic cells. Non-professional phagocytes such as  epithelial cells and fibroblasts also take part in this process; however, they are not as effective as professional phagocytes. 
Normal cells contain receptors that prevent them from being recognized by phagocytes.