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Retrovirus Life Cycles01:10

Retrovirus Life Cycles

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Retroviruses have a single-stranded RNA genome that undergoes a special form of replication. Once the retrovirus has entered the host cell, an enzyme called reverse transcriptase synthesizes double-stranded DNA from the retroviral RNA genome. This DNA copy of the genome is then integrated into the host’s genome inside the nucleus via an enzyme called integrase. Consequently, the retroviral genome is transcribed into RNA whenever the host’s genome is transcribed, allowing the...
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Retroviruses02:33

Retroviruses

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Retroviruses and retrotransposons both insert copies of their genetic elements into the genome of the host cell. Thus, the viral genes are passed on when the host genome is replicated or translated. A typical retroviral DNA sequence contains 3-4 genes that encode the different proteins required for its structural assembly and function as a molecular parasite. This DNA is transcribed into a single mRNA, which is very similar in structure to conventional mRNAs, i.e., it is capped at the 5’...
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LTR Retrotransposons03:08

LTR Retrotransposons

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LTR retrotransposons are class I transposable elements with long terminal repeats flanking an internal coding region. These elements are less abundant in mammals compared to other class I transposable elements. About 8 percent of human genomic DNA comprises LTR retrotransposons. Some of the common examples of LTR retrotransposons are Ty elements in yeast and Copia elements in Drosophila.
The internal coding region of LTR retrotransposons and their mechanism of transposition closely resembles a...
18.1K
Non-LTR Retrotransposons03:18

Non-LTR Retrotransposons

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As the name suggests, non-LTR retrotransposons lack the long terminal repeats characteristic of the LTR retrotransposons. Additionally, both LTR and non-LTR retrotransposons use distinct mechanisms of mobilization. Non-LTR retrotransposons are further divided into two classes - Long interspersed nuclear elements (LINEs) and short interspersed nuclear elements (SINEs), both of which occur abundantly in most mammals, including humans. Some of the active non-LTR retrotransposons in humans are L1...
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Mechanisms of Retrovirus-induced Cancers01:51

Mechanisms of Retrovirus-induced Cancers

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Retroviruses are RNA viruses that have been shown to cause cancers in diverse species, including chickens, mice, cats, and monkeys. The RNA genomes of these viruses are first reverse-transcribed into single and then double-stranded DNA (dsDNA) copies. This dsDNA called proviral DNA then integrates into the host genome. Subsequently, the host cell transcribes the proviral DNA in concert with the chromosomal DNA. This leads to the production of viral RNA and proteins that assemble at the host...
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Size and Structure of Viral Genomes01:26

Size and Structure of Viral Genomes

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Viral genomes exhibit remarkable diversity in size, structure, and composition, influencing their replication strategies and interactions with host cells. These genomes consist of either DNA or RNA and may be linear or circular. Additionally, they can be single-stranded or double-stranded, with each configuration affecting how the virus propagates within a host. RNA viruses, for instance, generally have smaller genomes than DNA viruses, a factor that contributes to their high mutation rates and...
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Related Experiment Video

Updated: May 3, 2026

Analysis of LINE-1 Retrotransposition at the Single Nucleus Level
11:52

Analysis of LINE-1 Retrotransposition at the Single Nucleus Level

Published on: April 23, 2016

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Origin and evolution of retroelements based upon their reverse transcriptase sequences.

Y Xiong1, T H Eickbush

  • 1Department of Biology, University of Rochester, NY 14627.

The EMBO Journal
|October 1, 1990
PubMed
Summary

This study traces the evolutionary history of reverse transcriptase (RT) elements. RNA-directed RNA polymerases share ancestry with RT, suggesting a common origin for these crucial genetic enzymes.

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Area of Science:

  • Molecular Biology
  • Evolutionary Biology
  • Genetics

Background:

  • Reverse transcriptase (RT) is a key enzyme in retroelements.
  • Understanding the evolutionary relationships of RT-containing elements is crucial for deciphering genome evolution.

Purpose of the Study:

  • To construct a phylogenetic tree of 82 retroelements from diverse organisms.
  • To investigate the evolutionary origins and relationships of RT-containing genetic elements.
  • To explore the ancestral state of retroelements and their diversification pathways.

Main Methods:

  • Phylogenetic analysis based on seven conserved amino acid domains (178 residues) of RT.
  • Identification of these domains in RNA-directed RNA polymerases from plus-strand RNA viruses.
  • Comparative analysis of genetic organization and tree positioning of retroelements.

Main Results:

  • A phylogenetic tree revealed evolutionary pathways of RT-containing elements.
  • RNA-directed RNA polymerases share common ancestry with RT, enabling rooting of the RT tree.
  • The probable ancestor of retroelements possessed both gag-like and pol-like genes.
  • Organelle and bacterial RT sequences likely originated from non-LTR retrotransposons.
  • LTR acquisition led to the evolution of LTR retrotransposons and various viral groups (retroviruses, hepadnaviruses, caulimoviruses).

Conclusions:

  • Retroelements evolved from a common ancestor with RNA-directed RNA polymerases.
  • The evolution of retroelements involved gene capture and the acquisition of long terminal repeats (LTRs).
  • This study provides insights into the diversification of retrotransposons and related viruses.