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Updated: Jul 19, 2026

A Method to Preserve Wetland Roots and Rhizospheres for Elemental Imaging
Published on: February 15, 2021
Frozen in time: a new method using cryo-scanning electron microscopy to visualize root-fungal interactions
Steve Refshauge1, Michelle Watt, Margaret E McCully
1CSIRO Plant Industry, GPO Box 1600, Canberra, ACT 2601, Australia.
A novel cryo-scanning electron microscopy method reveals intact fungal invasion in wheat roots. This technique preserves plant and fungal structures in three dimensions, offering a clearer view of diseases caused by necrotrophic fungi.
Area of Science:
- Plant Pathology
- Microscopy
Background:
- Wheat (Triticum aestivum) is susceptible to Rhizoctonia solani AG-8, a pathogenic fungus causing significant crop losses.
- Conventional sample preparation methods for microscopy can introduce artifacts, hindering accurate visualization of fungal-plant interactions.
Purpose of the Study:
- To develop and validate a new sample preparation method for cryo-scanning electron microscopy (cryo-SEM).
- To visualize the three-dimensional, in situ internal infection of wheat roots by Rhizoctonia solani AG-8 without artifacts.
Main Methods:
- A novel cryo-SEM sample preparation technique involving rapid freezing in liquid nitrogen.
- Cryo-planing and etching (sublimation) of frozen samples at -80°C for a critical duration (up to 9 minutes) within the microscope column.
- In situ observation of preserved plant and fungal structures.
Main Results:
- The new method successfully preserved fungal hyphae and wheat root cells in situ, avoiding distortions from conventional preparation.
- Root and fungal structures, including cell walls and hyphal architecture, were clearly visualized in three dimensions, irrespective of infection severity.
- The method allowed detailed observation of hyphal invasion within and between root cells.
Conclusions:
- This rapid cryo-SEM method provides high-fidelity, three-dimensional in situ visualization of fungal invasion in plant tissues.
- The technique has broad applicability for studying diseases caused by necrotrophic fungi in various plant-pathogen systems.
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