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LMSD: LIPID MAPS structure database.

Manish Sud1, Eoin Fahy, Dawn Cotter

  • 1LIPID MAPS Bioinformatics Core, San Diego Supercomputer Center San Diego, La Jolla, CA 92093, USA.

Nucleic Acids Research
|November 14, 2006
PubMed
Summary
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The LIPID MAPS Structure Database (LMSD) provides a comprehensive resource for biologically relevant lipid structures and annotations. It offers advanced search functionalities for easy data retrieval and access to external database links.

Area of Science:

  • Lipidomics
  • Biochemistry
  • Bioinformatics

Background:

  • The LIPID MAPS Structure Database (LMSD) is a critical resource for lipidomics research.
  • Accurate and comprehensive lipid structure data is essential for understanding biological processes.

Purpose of the Study:

  • To describe the LIPID MAPS Structure Database (LMSD) and its functionalities.
  • To highlight the diverse data sources and search capabilities of LMSD.

Main Methods:

  • LMSD integrates lipid structures from consortium data, experimental identification, computational generation, and manual curation from public sources.
  • Lipid structures are standardized for consistent representation.
  • The database supports classification-based, text-based (LMSD ID, name, mass, formula, category, class), and structure-based (substructure, exact match) searches.

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Main Results:

  • LMSD contains a curated collection of biologically relevant lipid structures and annotations.
  • Users can perform versatile searches using various criteria.
  • Search results include direct links to external databases for further information.

Conclusions:

  • LMSD serves as a valuable, publicly accessible platform for lipid research.
  • Its comprehensive data and advanced search features facilitate lipid structure discovery and analysis.