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Detection and Isolation of Campylobacter spp. from Raw Meat
05:34

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Published on: February 23, 2024

Specific detection of Campylobacter jejuni from faeces using single nucleotide polymorphisms.

E L Best1, A J Fox, R J Owen

  • 1Laboratory of Enteric Pathogens, Centre for Infections, Health Protection Agency, London, UK. emma.best@hpa.org.uk

Epidemiology and Infection
|November 18, 2006
PubMed
Summary

This study introduces a rapid real-time PCR method for detecting Campylobacter jejuni lineages directly from human faeces. The approach identifies specific single nucleotide polymorphisms (SNPs) to determine major clonal complexes, offering quick epidemiological data.

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Subtyping of Campylobacter jejuni ssp. doylei Isolates Using Mass Spectrometry-based PhyloProteomics (MSPP)

Published on: October 30, 2016

Area of Science:

  • Microbiology and Molecular Diagnostics
  • Infectious Disease Epidemiology

Background:

  • Campylobacter jejuni is a leading cause of bacterial gastroenteritis worldwide.
  • Traditional methods for C. jejuni typing, such as multi-locus sequence typing (MLST), are time-consuming and require isolates.
  • Rapid identification of C. jejuni lineages is crucial for timely epidemiological surveillance and public health interventions.

Purpose of the Study:

  • To develop and validate a rapid, direct molecular strategy for identifying C. jejuni clonal complexes from human faecal specimens.
  • To utilize single nucleotide polymorphisms (SNPs) associated with MLST clonal complexes for real-time PCR assay design.
  • To assess the accuracy of direct molecular identification against conventional MLST results.

Main Methods:

  • Analysis of C. jejuni MLST databases to identify lineage-specific SNPs.
  • Design and implementation of real-time PCR assays targeting six major C. jejuni clonal complexes.
  • Direct DNA extraction from human faecal specimens followed by real-time PCR, with confirmation by MLST on cultured isolates.

Main Results:

  • A rapid DNA extraction method allowed identification of 38% of isolates to a major MLST clonal complex directly from faeces in under 3 hours.
  • The real-time PCR assays successfully identified specific C. jejuni clonal complexes.
  • Results from the direct molecular method showed comparability with conventional MLST findings.

Conclusions:

  • A novel, rapid real-time PCR strategy based on SNPs enables direct detection and characterization of C. jejuni beyond species level from faecal samples.
  • This method provides real-time epidemiological data, offering a faster alternative to traditional typing methods.
  • The SNP-based approach demonstrates validity for direct molecular specimen identification and epidemiological surveillance.