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Updated: Jul 17, 2026

Study of Protein-protein Interactions in Autophagy Research
Published on: September 9, 2017
mTOR kinase and the regulatory subunit of protein kinase A (PRKAR1A) spatially and functionally interact during
Manos Mavrakis1, Jennifer Lippincott-Schwartz, Constantine A Stratakis
1Cell Biology and Metabolism Branch, Section on Endocrinology and Genetics, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland 20892-5430, USA.
Abstract:
The regulatory subunit 1-alpha (RIalpha) of protein kinase A (PKA) and the mTOR kinase are involved in a common pathway regulating mammalian autophagy. RIalpha was found to localize on Rab7-positive late endosomes and on LC3-positive autophagosomal membranes in cultured cells. RIalpha was also shown to physically interact with mTOR kinase and affect its phosphorylation and activity. In this addendum, we further explore the subcellular distribution of mTOR related to RIalpha and LC3. We present experiments showing that mTOR colocalizes with RIalpha-, Rab7- and LC3-positive membranes in cultured cells. Because RIalpha regulates the phosphorylation and activity of mTOR kinase, which we now show localizes on autophagosomal membranes, the possibility emerges that the RIalpha-mTOR complex acts at the level of autophagosome maturation.
Insights
The regulatory subunit RIalpha of PKA interacts with mTOR kinase, localizing to autophagosomes and influencing autophagy regulation. This suggests a role for the RIalpha-mTOR complex in autophagosome maturation.
Area of Science:
- Cellular Biology
- Molecular Biology
- Biochemistry
Background:
- The regulatory subunit 1-alpha (RIalpha) of protein kinase A (PKA) and mTOR kinase are key regulators of mammalian autophagy.
- RIalpha has been observed to localize on late endosomes and autophagosomal membranes.
Purpose of the Study:
- To investigate the subcellular distribution of mTOR in relation to RIalpha and LC3.
- To explore the functional implications of the RIalpha-mTOR interaction in autophagy.
Main Methods:
- Immunofluorescence microscopy to determine colocalization of RIalpha, mTOR, Rab7, and LC3.
- Biochemical assays to assess mTOR phosphorylation and activity.
Main Results:
- mTOR was found to colocalize with RIalpha, Rab7, and LC3 on cellular membranes.
- RIalpha was confirmed to interact with mTOR, affecting its phosphorylation and activity.
- These findings indicate that mTOR is present on autophagosomal membranes.
Conclusions:
- The RIalpha-mTOR complex is positioned on autophagosomal membranes.
- RIalpha's regulation of mTOR activity suggests a role in autophagosome maturation.
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