Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Pulmonary Structural MRI using Free-Breathing, Self-Gated Ultra-short Echo Time Imaging05:07

Pulmonary Structural MRI using Free-Breathing, Self-Gated Ultra-short Echo Time Imaging

717
A protocol is described for generating high-resolution structural images of the lungs using ultra-short-echo time (UTE) Magnetic Resonance Imaging (MRI). This protocol allows for images to be acquired using a simple MRI pulse sequence during free-breathing.
717
Study of Protein Dynamics via Neutron Spin Echo Spectroscopy08:03

Study of Protein Dynamics via Neutron Spin Echo Spectroscopy

2.5K
The present protocol describes methods for investigating the structure and dynamics of two model proteins that have an important role in human health. The technique combines bench-top biophysical characterization with neutron spin echo spectroscopy to access the dynamics at time and length scales relevant for protein interdomain...
2.5K
Neutron Spin Echo Spectroscopy as a Unique Probe for Lipid Membrane Dynamics and Membrane-Protein Interactions10:02

Neutron Spin Echo Spectroscopy as a Unique Probe for Lipid Membrane Dynamics and Membrane-Protein Interactions

4.5K
This paper describes the protocols for sample preparation, data reduction, and data analysis in neutron spin echo (NSE) studies of lipid membranes. Judicious deuterium labeling of lipids enables access to different membrane dynamics on mesoscopic length and time scales, over which vital biological processes...
4.5K
Optogenetic Functional MRI06:06

Optogenetic Functional MRI

15.4K
This protocol describes the steps and data analysis required to successfully perform optogenetic functional magnetic resonance imaging (ofMRI). ofMRI is a novel technique that combines high-field fMRI readout with optogenetic stimulation, allowing for cell type-specific mapping of functional neural circuits and their dynamics across the whole living...
15.4K
Network Analysis of the Default Mode Network Using Functional Connectivity MRI in Temporal Lobe Epilepsy12:09

Network Analysis of the Default Mode Network Using Functional Connectivity MRI in Temporal Lobe Epilepsy

18.5K
The Default Mode Network (DMN) in Temporal Lobe Epilepsy (TLE) is analyzed in the resting state of the brain using seed-based functional connectivity MRI...
18.5K
Using Neutron Spin Echo Resolved Grazing Incidence Scattering to Investigate Organic Solar Cell Materials06:05

Using Neutron Spin Echo Resolved Grazing Incidence Scattering to Investigate Organic Solar Cell Materials

8.3K
Progress has been made in utilizing spin echo resolved grazing incidence scattering (SERGIS) as a neutron scattering technique to probe the length-scales in irregular samples. Crystallites of [6,6]-phenyl-C61-butyric acid methyl ester have been probed using the SERGIS technique and the results confirmed by optical and atomic force...
8.3K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Effects of riluzole on excitation-inhibition imbalance and functional connectivity in 22q11.2 deletion syndrome: a multimodal 7-Tesla MRI study.

Psychiatry research. Neuroimaging·2026
Same author

Editorial: Advancing high-resolution 3T MRI for cognitive and clinical neuroscience.

Frontiers in neuroscience·2026
Same author

The association between medial prefrontal GABA concentration and memory performance is disrupted in human with a high body mass index.

Brain imaging and behavior·2026
Same author

Enhancing Accessibility and Engagement in the MRI Community: Reflections on the 2025 ISMRM MiniHub in Lille, France.

Magnetic resonance in medicine·2026
Same author

Cross-site quantitative MRI harmonization: The impact on age modeling in health and disease.

Imaging neuroscience (Cambridge, Mass.)·2026
Same author

Mapping heterogeneous region- and tissue-specific brain ageing patterns using quantitative MRI.

Brain communications·2026
Same journal

Influence of gadolinium-based contrast agent (GBCA) on the diffusion weightings of breast lesions: an intra-patient analysis.

Magma (New York, N.Y.)·2026
Same journal

Evaluation of the diffusion time dependence of the IVIM effect based on realistic capillary flow simulations in mouse brain.

Magma (New York, N.Y.)·2026
Same journal

An evaluation of brain volume and cortical thickness measurement at 0.55 T.

Magma (New York, N.Y.)·2026
Same journal

Net zero emission MR imaging using a permanent 0.4 T magnet.

Magma (New York, N.Y.)·2026
Same journal

Special issue on "deuterium metabolic imaging".

Magma (New York, N.Y.)·2026
Same journal

Black-blood dynamic contrast-enhanced MRI of abdominal aortic aneurysms.

Magma (New York, N.Y.)·2026
See all related articles

Related Experiment Video

Updated: Jan 19, 2026

Author Spotlight: Optimized Lung MRI Protocol with Computationally Efficient Reconstruction Methods
05:07

Author Spotlight: Optimized Lung MRI Protocol with Computationally Efficient Reconstruction Methods

Published on: September 6, 2024

717

Fast spin echo sequences for BOLD functional MRI.

Benedikt A Poser1, David G Norris

  • 1FC Donders Centre for Cognitive Neuroimaging, Trigon 181, P. O. Box 9101, 6500 HB, Nijmegen, The Netherlands. benedikt.poser@fcdonders.ru.nl

Magma (New York, N.Y.)
|January 25, 2007
PubMed
Summary
This summary is machine-generated.

This study evaluates a specialized magnetic resonance imaging technique designed to improve brain activity mapping. By combining advanced sampling methods, researchers achieved faster image acquisition while minimizing common distortions. The findings suggest this approach provides a reliable alternative for capturing brain signals without the typical artifacts found in standard scans.

Keywords:
BOLD signalmicrovasculatureparallel imagingT2* effectsneuroimaging

Frequently Asked Questions

More Related Videos

Study of Protein Dynamics via Neutron Spin Echo Spectroscopy
08:03

Study of Protein Dynamics via Neutron Spin Echo Spectroscopy

Published on: April 13, 2022

2.5K
Optogenetic Functional MRI
06:06

Optogenetic Functional MRI

Published on: April 19, 2016

15.4K

Related Experiment Videos

Last Updated: Jan 19, 2026

Author Spotlight: Optimized Lung MRI Protocol with Computationally Efficient Reconstruction Methods
05:07

Author Spotlight: Optimized Lung MRI Protocol with Computationally Efficient Reconstruction Methods

Published on: September 6, 2024

717
Study of Protein Dynamics via Neutron Spin Echo Spectroscopy
08:03

Study of Protein Dynamics via Neutron Spin Echo Spectroscopy

Published on: April 13, 2022

2.5K
Optogenetic Functional MRI
06:06

Optogenetic Functional MRI

Published on: April 19, 2016

15.4K

Area of Science:

  • Neuroimaging research within Fast spin echo sequences for BOLD functional MRI
  • Biomedical engineering in medical physics

Background:

Neuroscientists frequently utilize blood oxygen level dependent imaging to map brain activity across various cognitive tasks. Standard gradient echo methods often suffer from signal voids and geometric distortions that complicate data interpretation. Spin echo sequences provide better localization of signals by focusing on microvasculature rather than larger vessels. However, traditional spin echo approaches often require long acquisition times that limit their utility in rapid functional studies. High energy deposition remains a significant barrier when implementing these sequences for frequent brain scanning. No prior work had fully resolved the trade-off between image quality and temporal resolution in this specific context. That uncertainty drove the development of faster acquisition schemes to overcome these limitations. This paper addresses the challenge of applying multiply refocused sequences to high-speed functional imaging tasks.

Purpose Of The Study:

The study aims to evaluate the feasibility of using fast spin echo sequences for rapid functional magnetic resonance imaging. Researchers seek to overcome the limitations of conventional gradient echo methods, such as signal voids and geometric distortions. The project addresses the challenge of high energy deposition that typically hinders the application of multiply refocused sequences. By combining parallel imaging and partial Fourier acquisition, the team intends to shorten acquisition times to match standard echo planar imaging. The authors investigate whether these modifications allow for efficient sampling of brain activity. They also explore the contribution of extravascular dynamic averaging to the blood oxygen level dependent signal. The motivation stems from the need for distortion-free images that provide better localization of brain activation. This work provides a systematic comparison between the new sequence and traditional techniques using a visual stimulation paradigm.

Main Methods:

The investigation employs a modified multiply refocused sequence to achieve rapid data collection. Researchers integrate parallel imaging to reduce the total time required for each scan. Partial Fourier acquisition further accelerates the process by sampling only a portion of the frequency space. This design aims to match the temporal efficiency of conventional echo planar imaging schemes. The team implements a preparation experiment to refine the sensitivity of the blood oxygen level dependent signal. They conduct a visual stimulation paradigm to test the performance of the new sequence. Comparisons are drawn against standard echo planar imaging to validate the reliability of the results. The experimental setup allows for the acquisition of eight slices per second with a matrix size of 64 by 64.

Main Results:

The researchers report that their sequence produces signal changes approximately 30% lower than those observed in conventional echo planar imaging. This reduction is attributed to the absence of T2* contamination in the spin echo data. Despite the lower signal magnitude, the activation size and statistical t-scores remain comparable between the two methods. The study successfully achieves a sampling rate of eight slices per second using a 64 by 64 matrix. The resulting images are free from the signal voids and geometric distortions typically seen in gradient echo scans. The authors demonstrate that the preparation experiment effectively shifts the signal weighting toward extravascular dynamic averaging. The data suggest that the post-stimulus undershoot is linked to persistent elevated oxygen metabolism. These findings confirm that the proposed sequence is a viable alternative for functional studies requiring high spatial fidelity.

Conclusions:

The authors propose that their modified imaging sequence serves as a viable alternative to conventional methods. This approach is particularly useful when researchers require images free from geometric distortions. The observed reduction in signal changes likely stems from the absence of unwanted contamination from magnetic field inhomogeneities. Activation size and statistical scores remain comparable between the two tested methods despite lower absolute signal intensity. The researchers suggest that their preparation experiment successfully enhances the contribution of extravascular signals to the final measurement. Data from this study indicate that the post-stimulus undershoot reflects persistent elevated oxygen metabolism. This finding challenges the alternative hypothesis that delayed vascular compliance drives the observed signal dip. The study demonstrates that parallel imaging and partial Fourier acquisition effectively mitigate previous constraints on scan speed.

The researchers propose that the post-stimulus undershoot arises from sustained elevated oxygen metabolism. This mechanism contrasts with the alternative hypothesis of delayed vascular compliance, which suggests the signal dip results from slow blood vessel recovery.

The study utilizes a combination of parallel imaging and partial Fourier acquisition. These techniques allow for faster image collection, which helps overcome the high energy deposition and long sampling times typically associated with fast spin echo sequences.

The researchers state that the preparation experiment is necessary to increase the relative contribution of extravascular dynamic averaging to the BOLD signal. This step ensures that the final images better reflect microvascular activity rather than larger vessel effects.

The researchers employ a visual stimulation paradigm to compare the new sequence against conventional echo planar imaging. This data type allows for a direct assessment of activation size, statistical t-scores, and signal change magnitude under controlled conditions.

The researchers measured signal changes that were approximately 30% lower in the new sequence compared to standard methods. They attribute this difference to the lack of T2* contamination, which typically inflates signal changes in gradient echo scans.

The authors suggest that this imaging protocol is a viable alternative when distortion-free images are required. They highlight that while signal intensity is lower, the spatial localization and statistical reliability remain comparable to traditional techniques.