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Published on: July 25, 2020
Alternate molecular genetic pathways in ovarian carcinomas of common histological types
Julia Willner1, Kaitlyn Wurz, Kimberly H Allison
1Division of Gynecologic Oncology, Department of Obstetrics and Gynecology, University of Washington, Seattle, WA 98195, USA.
Abstract:
We evaluated alterations in p53, PIK3CA, PTEN, CTNNB1 (beta-catenin), MLH1, and BRAF among common histological subsets of epithelial ovarian tumors to characterize patterns of alterations of different molecular pathways. There were 12 clear cell, 26 endometrioid, and 51 serous carcinomas evaluated by direct DNA sequencing for mutations in p53, PIK3CA, PTEN, BRAF, and CTNNB1. Methylation-specific polymerase chain reaction (PCR) assessed MLH1 promoter methylation status. Quantitative PCR identified PIK3CA amplification in 22 EC/CC and 94 SC. p53 mutations were identified in 25 (49%) of 51 SC, 11 (42%) of 26 EC, and 1 (8.3%) of 12 CC neoplasms and were more common in grade 3 EC (P = .045) and advanced-stage EC/CC (P = .007). PIK3CA mutations were identified in 3 (25%) of 12 CC, 3 (12%) of 26 EC, and 0 of 51 SC. PTEN mutations were significantly more common in EC (8/26, 31%) compared with CC (0/12; P = .04) and SC (2/51, 4%; P = .002). CTNNB1 mutations were identified, 6 (23%) EC and no CC or SC (P = .008). Both PTEN and CTNNB1 mutations were more common in low-grade EC/CC, whereas PIK3CA mutations occurred only in grade 3 cancers. PTEN and PIK3CA mutations were more common in p53 wild-type tumors (P = .003). PIK3CA amplification occurred in fewer EC/CC (0/22) versus SC (19/94, 20%; P = 0.02) and were slightly more common in p53 wild-type compared with p53 mutant SC (P = .08). Of 26 EC, 22 (85%) had a mutation in one of the genes studied compared with 4 33% of 12 CC (P = .003). Women with EC/CC had significantly better overall survival (P = .0008), and this remained significant after accounting for stage (P=.04). Mutations in p53 or in PTEN/PIK3CA are alternative pathways in ovarian carcinogenesis. Activation of PIK3CA occurs by gene amplification in SC but via somatic mutation of PIK3CA or PTEN in EC and CC. PIK3CA mutations are associated with high-grade tumors, whereas PTEN and CTNNB1 mutations are associated with low-grade tumors. Mutations in p53, PIK3CA, PTEN, and CTNNB1 account for most EC tumors; most CC remain unexplained. EC/CC histology is a favorable prognostic factor.
Insights
This study reveals distinct molecular pathway alterations in ovarian cancer subtypes. Endometrioid and clear cell ovarian cancers show better survival and different gene mutations compared to serous types.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Epithelial ovarian tumors comprise various histological subtypes with distinct molecular characteristics.
- Understanding these molecular differences is crucial for targeted therapies and improved patient outcomes.
Purpose of the Study:
- To investigate and compare the mutational profiles of key genes (p53, PIK3CA, PTEN, CTNNB1, MLH1, BRAF) across common epithelial ovarian tumor subtypes.
- To identify distinct molecular pathway alterations associated with different histological subsets of ovarian cancer.
- To correlate these molecular alterations with tumor grade, stage, and patient survival.
Main Methods:
- Direct DNA sequencing was employed to analyze mutations in p53, PIK3CA, PTEN, BRAF, and CTNNB1 in 12 clear cell (CC), 26 endometrioid (EC), and 51 serous carcinomas (SC).
- Methylation-specific PCR assessed MLH1 promoter methylation status.
- Quantitative PCR identified PIK3CA amplification.
Main Results:
- p53 mutations were frequent in serous carcinomas (49%) and endometrioid carcinomas (42%), but rare in clear cell (8.3%).
- PTEN mutations were significantly more common in endometrioid (31%) versus clear cell (P = .04) and serous (4%, P = .002) types.
- CTNNB1 mutations were identified in 23% of endometrioid tumors but none of the clear cell or serous types.
- PIK3CA mutations occurred in clear cell (25%) and endometrioid (12%) but not serous carcinomas.
- PIK3CA amplification was observed in 20% of serous carcinomas but not in endometrioid/clear cell types.
- Endometrioid and clear cell histology correlated with significantly better overall survival (P = .0008).
- Mutations in p53 or PTEN/PIK3CA represent alternative oncogenic pathways in ovarian cancer.
- PIK3CA activation occurs via amplification in serous carcinomas and mutation in endometrioid/clear cell types.
- PTEN and CTNNB1 mutations are associated with low-grade tumors, while PIK3CA mutations are linked to high-grade tumors.
Conclusions:
- Distinct molecular alterations characterize different epithelial ovarian tumor subtypes.
- Endometrioid and clear cell ovarian cancers exhibit unique genetic profiles and a more favorable prognosis compared to serous carcinomas.
- Understanding these subtype-specific molecular pathways is essential for developing personalized treatment strategies in ovarian cancer.
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