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A Fast and Reliable Pipeline for Bacterial Transcriptome Analysis Case study: Serine-dependent Gene Regulation in Streptococcus pneumoniae
Published on: April 25, 2015
Gene expression profiling of the response of Streptococcus pneumoniae to penicillin
P David Rogers1, Teresa T Liu, Katherine S Barker
1Department of Pharmacy, College of Pharmacy, University of Tennessee Health Science Center, Memphis, TN 38163, USA. drogers@utmem.edu
Objectives:
The aim of this study was to identify changes in the gene expression profile of Streptococcus pneumoniae in response to a subinhibitory concentration of penicillin in an effort to better understand mechanisms by which this organism copes with this stress.
Methods:
S. pneumoniae serotype 2 strain D39 was grown for 1 h in the presence or absence of penicillin at a concentration equivalent to half the MIC (0.03 mg/L). RNA was isolated and gene expression profiles were compared using DNA microarrays. Differential expression of select genes was confirmed by real-time RT-PCR.
Results:
A total of 386 genes were found to be responsive to penicillin. Up-regulated genes included those of the ciaR-ciaH operon, luxS, genes encoding cell envelope proteins and genes of the pst locus. Down-regulated genes included genes involved in competence, genes encoding capsular polysaccharide biosynthesis proteins, genes involved in fatty acid chain elongation and genes of the polyamine transporter operon.
Conclusions:
Altered expression of these genes reflects a protective response to perturbation of the bacterial cell wall by penicillin. Such genes may represent potential therapeutic targets for enhancing the activity of penicillin against this organism and provide insight into novel mechanisms of penicillin resistance.
Insights
This study reveals how Streptococcus pneumoniae alters gene expression to survive low penicillin doses. Understanding these changes in bacterial cell wall response may lead to new therapeutic targets against penicillin resistance.
Area of Science:
- Microbiology
- Genomics
- Molecular Biology
Background:
- Streptococcus pneumoniae is a major human pathogen.
- Penicillin is a key antibiotic for treating S. pneumoniae infections.
- Understanding bacterial stress responses is crucial for combating antibiotic resistance.
Purpose of the Study:
- To investigate gene expression changes in S. pneumoniae exposed to subinhibitory penicillin concentrations.
- To elucidate the mechanisms of bacterial adaptation to penicillin stress.
- To identify potential therapeutic targets for enhancing penicillin efficacy.
Main Methods:
- S. pneumoniae strain D39 was cultured with and without subinhibitory penicillin (0.03 mg/L).
- Global gene expression profiling was performed using DNA microarrays.
- Real-time RT-PCR was employed to validate differential gene expression.
Main Results:
- A total of 386 genes exhibited altered expression in response to penicillin.
- Upregulated genes included the ciaR-ciaH operon, luxS, and genes involved in cell envelope synthesis and the pst locus.
- Downregulated genes encompassed those related to competence, capsule biosynthesis, fatty acid elongation, and polyamine transport.
Conclusions:
- The observed gene expression alterations represent a protective response to penicillin-induced cell wall damage.
- These responsive genes could serve as novel therapeutic targets to improve penicillin activity.
- The findings offer insights into previously unknown mechanisms of penicillin resistance in S. pneumoniae.
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