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Updated: Jul 16, 2026

An Integrated Platform for Genome-wide Mapping of Chromatin States Using High-throughput ChIP-sequencing in Tumor Tissues
Published on: April 5, 2018
Epigenetics provides a new generation of oncogenes and tumour-suppressor genes
1Cancer Epigenetics Laboratory, Molecular Pathology Programme, Spanish National Cancer Centre (CNIO), 28029 Madrid, Spain. mesteller@cnio.es
Abstract:
Cancer is nowadays recognised as a genetic and epigenetic disease. Much effort has been devoted in the last 30 years to the elucidation of the 'classical' oncogenes and tumour-suppressor genes involved in malignant cell transformation. However, since the acceptance that major disruption of DNA methylation, histone modification and chromatin compartments are a common hallmark of human cancer, epigenetics has come to the fore in cancer research. One piece is still missing from the story: are the epigenetic genes themselves driving forces on the road to tumorigenesis? We are in the early stages of finding the answer, and the data are beginning to appear: knockout mice defective in DNA methyltransferases, methyl-CpG-binding proteins and histone methyltransferases strongly affect the risk of cancer onset; somatic mutations, homozygous deletions and methylation-associated silencing of histone acetyltransferases, histone methyltransferases and chromatin remodelling factors are being found in human tumours; and the first cancer-prone families arising from germline mutations in epigenetic genes, such as hSNF5/INI1, have been described. Even more importantly, all these 'new' oncogenes and tumour-suppressor genes provide novel molecular targets for designed therapies, and the first DNA-demethylating agents and inhibitors of histone deacetylases are reaching the bedside of patients with haematological malignancies.
Insights
Epigenetic genes, like DNA methyltransferases and histone modifiers, are increasingly recognized as drivers of cancer development. Mutations in these genes can lead to increased cancer risk and offer new therapeutic targets.
Area of Science:
- Oncology
- Epigenetics
- Molecular Biology
Background:
- Cancer is understood as a genetic and epigenetic disease.
- Epigenetic alterations, including DNA methylation and histone modification, are hallmarks of human cancer.
- The role of epigenetic genes as drivers of tumorigenesis is an emerging area of research.
Purpose of the Study:
- To investigate whether epigenetic genes are driving forces in cancer development.
- To explore the link between epigenetic gene dysfunction and tumorigenesis.
- To identify novel therapeutic targets based on epigenetic alterations.
Main Methods:
- Analysis of knockout mice models with defects in epigenetic regulators.
- Detection of somatic mutations, deletions, and silencing of epigenetic genes in human tumors.
- Identification of germline mutations in epigenetic genes associated with cancer predisposition.
Main Results:
- Defects in DNA methyltransferases, methyl-CpG-binding proteins, and histone methyltransferases in mice increase cancer risk.
- Human tumors exhibit mutations, deletions, and silencing of histone acetyltransferases, histone methyltransferases, and chromatin remodelers.
- Germline mutations in epigenetic genes like hSNF5/INI1 are linked to cancer predisposition.
Conclusions:
- Epigenetic genes function as novel oncogenes and tumor suppressors.
- These epigenetic alterations provide new molecular targets for cancer therapies.
- DNA-demethylating agents and histone deacetylase inhibitors are emerging as treatments for hematological malignancies.
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