Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

The neuroscience education readiness checklist for digital tools and methods.

Frontiers in computational neuroscience·2026
Same author

CalciMAP: High-resolution images showing calbindin- and parvalbumin-expressing neurons across the developing and adult mouse brain.

Scientific data·2026
Same author

Indoor air quality and its effects on lung function and respiratory symptoms among textile spinning mill workers in India.

Work (Reading, Mass.)·2026
Same author

Brain Organoids, Lessons from Fetal Neocortex Formation, and Rational Design for Quality Control.

bioRxiv : the preprint server for biology·2026
Same author

Oncogenic cell fate decision in breast epithelial cells I: growth factors and mechanisms.

Research square·2026
Same author

Performance evaluation of an EEG-guided robotic glove with machine learning models for hand rehabilitation in injured athletes.

Journal of back and musculoskeletal rehabilitation·2026

Related Experiment Video

Updated: Jul 15, 2026

Ultrasound Localization Microscopy for Super-Resolution Mapping of the Rodent Brain Microvasculature
10:36

Ultrasound Localization Microscopy for Super-Resolution Mapping of the Rodent Brain Microvasculature

Published on: November 14, 2025

Toward a workbench for rodent brain image data: systems architecture and design.

Ivar A Moene1, Shankar Subramaniam, Dmitri Darin

  • 1Neural Systems and Graphics Computing Laboratory, Centre for Molecular Biology and Neuroscience & Institute of Basic Medical Sciences, University of Oslo, PO Box 1105 Blindern, N-0317 Oslo, Norway.

Neuroinformatics
|April 12, 2007
PubMed
Summary

A new system, the Rodent Brain Workbench, offers web-based tools for storing, querying, and analyzing microscopic brain images and associated data. This facilitates neuroscience research by providing accessible visualization and analysis of rodent brain anatomy.

More Related Videos

Multiple-mouse Neuroanatomical Magnetic Resonance Imaging
09:08

Multiple-mouse Neuroanatomical Magnetic Resonance Imaging

Published on: February 27, 2011

Development of an Uncomplicated Mild Traumatic Brain Injury Model Modified by Weight-Drop Method and Evidenced by Magnetic Resonance Imaging
08:27

Development of an Uncomplicated Mild Traumatic Brain Injury Model Modified by Weight-Drop Method and Evidenced by Magnetic Resonance Imaging

Published on: April 11, 2025

Related Experiment Videos

Last Updated: Jul 15, 2026

Ultrasound Localization Microscopy for Super-Resolution Mapping of the Rodent Brain Microvasculature
10:36

Ultrasound Localization Microscopy for Super-Resolution Mapping of the Rodent Brain Microvasculature

Published on: November 14, 2025

Multiple-mouse Neuroanatomical Magnetic Resonance Imaging
09:08

Multiple-mouse Neuroanatomical Magnetic Resonance Imaging

Published on: February 27, 2011

Development of an Uncomplicated Mild Traumatic Brain Injury Model Modified by Weight-Drop Method and Evidenced by Magnetic Resonance Imaging
08:27

Development of an Uncomplicated Mild Traumatic Brain Injury Model Modified by Weight-Drop Method and Evidenced by Magnetic Resonance Imaging

Published on: April 11, 2025

Area of Science:

  • Neuroscience
  • Bioinformatics
  • Computational Biology

Background:

  • Microscopic brain imaging generates large datasets requiring specialized storage and analysis tools.
  • Current methods for managing and analyzing neuroanatomical data can be fragmented and difficult to access.
  • There is a need for integrated systems to support complex querying and visualization of brain data.

Purpose of the Study:

  • To develop a novel, three-tier system for storing and manipulating microscopic brain images and extracted data.
  • To provide neuroscientists with a user-friendly, web-based interface for accessing and analyzing neuroanatomical information.
  • To create an extensible platform for the functional anatomy of the cerebro-cerebellar system and other brain circuits.

Main Methods:

  • Implementation of a three-tier architecture with Oracle relational database for data storage.
  • Development of an application layer with tools for querying, visualization, and data analysis.
  • Utilizing modern web browser protocols for the presentation layer, ensuring ease of use.

Main Results:

  • The Functional Anatomy of the Cerebro-Cerebellar System (FACCS) application is released via The Rodent Brain Workbench (http://rbwb.org/).
  • The system successfully stores and allows complex querying of axonal tracing data for the rat cerebro-cerebellar system.
  • The platform is designed for extensibility to other brain circuits, projections, and image data types.

Conclusions:

  • The Rodent Brain Workbench provides a unique and extensible environment for the analysis of rodent brain maps and anatomical data.
  • The system supports both interactive remote use and local server deployment.
  • This novel system enhances neuroscience research by integrating data storage, querying, and analysis capabilities.