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Updated: Jul 15, 2026

Multiplex PCR Assay for Typing of Staphylococcal Cassette Chromosome Mec Types I to V in Methicillin-resistant Staphylococcus aureus
Published on: September 5, 2013
Multiple-locus variable-number tandem-repeat assay analysis of methicillin-resistant Staphylococcus aureus strains
Fred C Tenover1, Rebekah R Vaughn, Linda K McDougal
1Division of Healthcare Quality Promotion (G-08), Centers for Disease Control and Prevention, 1600 Clifton Rd. NE, Atlanta, GA 30333, USA. fnt1@cdc.gov
Multiple-locus variable-number tandem-repeat analysis (MLVA) shows promise as a faster alternative to pulsed-field gel electrophoresis (PFGE) for typing Staphylococcus aureus strains, though it doesn't fully distinguish all lineages.
Area of Science:
- Microbiology
- Molecular Typing
- Infectious Diseases
Background:
- Pulsed-field gel electrophoresis (PFGE) is a standard method for typing Staphylococcus aureus.
- There is a need for simpler, more rapid molecular typing methods for S. aureus.
- Multiple-locus variable-number tandem-repeat analysis (MLVA) is a potential alternative.
Purpose of the Study:
- To evaluate if MLVA can predict PFGE types (USA types) of S. aureus.
- To assess MLVA as a replacement for PFGE for S. aureus strain typing.
- To determine the discriminatory power of MLVA for S. aureus.
Main Methods:
- Tested 103 S. aureus isolates from 13 lineages using both PFGE and MLVA.
- MLVA employed rapid DNA extraction and PCR for specific genetic markers.
- PFGE followed standard CDC protocols with SmaI digestion and analysis.
Main Results:
- Both MLVA and PFGE successfully typed all isolates with high reproducibility for MLVA.
- MLVA generated more types (28-45) than PFGE (13 types, 42 subtypes) depending on analysis.
- MLVA differentiated outbreak strains (USA300-0114) but did not distinguish community from healthcare MRSA lineages.
Conclusions:
- MLVA is a reproducible and potentially faster method for S. aureus typing.
- MLVA offers higher discriminatory power than PFGE for certain strain types.
- Further research is needed to explore MLVA's full epidemiologic value.
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