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Chromatin Immunoprecipitation Assay Using Micrococcal Nucleases in Mammalian Cells
Published on: May 10, 2019
Mammalian Maf1 is a negative regulator of transcription by all three nuclear RNA polymerases
Sandra S Johnson1, Cheng Zhang, Jody Fromm
1Department of Biochemistry and Molecular Biology, Keck School of Medicine and the Norris Comprehensive Cancer Center, University of Southern California, 2011 Zonal Avenue, Los Angeles, CA 90033, USA.
Abstract:
Most eukaryotic transcriptional regulators act in an RNA polymerase (Pol)-selective manner. Here we show that the human Maf1 protein negatively regulates transcription by all three nuclear Pols. Changes in Maf1 expression affect Pol I- and Pol III-dependent transcription in human glioblastoma lines. These effects are mediated, in part, through the ability of Maf1 to repress transcription of the TATA binding protein, TBP. Maf1 targets an Elk-1-binding site in the TBP promoter, and its occupancy of this region is reciprocal with that of Elk-1. Similarly, Maf1 occupancy of Pol III genes is inversely correlated with that of the initiation factor TFIIIB and Pol III. The phenotypic consequences of reducing Maf1 expression include changes in cell morphology and the accumulation of actin stress fibers, whereas Maf1 overexpression suppresses anchorage-independent growth. Together with the ability of Maf1 to reduce biosynthetic capacity, these findings support the idea that Maf1 regulates the transformation state of cells.
Insights
Human Maf1 protein negatively regulates transcription by all nuclear RNA polymerases (Pols). Maf1 affects glioblastoma cell morphology and growth, suggesting it regulates cellular transformation.
Area of Science:
- Molecular Biology
- Cell Biology
- Cancer Research
Background:
- Most eukaryotic transcriptional regulators exhibit RNA polymerase (Pol)-selective activity.
- The role of Maf1 in regulating transcription across different Pols is not fully understood.
Purpose of the Study:
- To investigate the role of human Maf1 protein in regulating transcription by all three nuclear RNA polymerases.
- To elucidate the mechanisms by which Maf1 influences transcription and cellular phenotypes.
Main Methods:
- Assessing Maf1's impact on Pol I- and Pol III-dependent transcription in human glioblastoma cells.
- Analyzing Maf1's interaction with the TATA binding protein (TBP) promoter and its effect on transcription factors.
- Correlating Maf1 occupancy with initiation factors and Pol III on Pol III genes.
- Evaluating phenotypic changes associated with altered Maf1 expression, including cell morphology, actin stress fibers, and anchorage-independent growth.
Main Results:
- Human Maf1 protein negatively regulates transcription by RNA Pol I, Pol II, and Pol III.
- Maf1 represses TBP transcription by targeting an Elk-1-binding site, with reciprocal occupancy.
- Maf1 occupancy on Pol III genes is inversely correlated with TFIIIB and Pol III.
- Reduced Maf1 expression alters cell morphology and increases actin stress fibers; Maf1 overexpression suppresses anchorage-independent growth.
Conclusions:
- Maf1 acts as a global transcriptional repressor affecting all nuclear RNA polymerases.
- Maf1's regulation of TBP and Pol III genes contributes to its control over cellular phenotypes.
- Maf1 plays a significant role in regulating the transformation state of cells, impacting cell morphology and growth characteristics.
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