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Updated: Jul 15, 2026

Single-Molecule Dwell-Time Analysis of Restriction Endonuclease-Mediated DNA Cleavage
Published on: February 7, 2021
Dissociative electron attachment to hydrated single DNA strands.
Sylwia Ptasińska1, Léon Sanche
1Department of Nuclear Medicine and Radiobiology, Faculty of Medicine, Université de Sherbrooke, Sherbrooke, Québec, Canada J1H 5N4. sylwia.ptasinska@usherbrooke.ca
Electron interactions with DNA films covered in water release negative ions like H-, O-, and OH-. Water enhances the overall anion yield from DNA by 1.6 times, indicating a significant interaction effect.
Area of Science:
- Physical Chemistry
- Biophysics
- Materials Science
Background:
- Understanding electron interactions with biological molecules like DNA is crucial for radiation biology and astrobiology.
- The role of water, a ubiquitous solvent, in modifying electron-induced processes in DNA is not fully understood.
- Previous studies have focused on condensed phases or isolated DNA, leaving gaps in knowledge regarding thin films with controlled hydration.
Purpose of the Study:
- To investigate the desorption of negative ions (H-, O-, OH-) from short single DNA strands hydrated with water upon electron impact.
- To identify the mechanisms responsible for anion formation and desorption.
- To quantify the effect of water on the overall anion yield from DNA.
Main Methods:
- Experiments involving electron interactions with a DNA film covered by 3 monolayers of water (5.25 water molecules per nucleotide).
- Electron beam energy varied from 3-20 eV to induce desorption of H-, O-, and OH- anions.
- Analysis of anion yields and their dependence on electron energy and the presence of water.
Main Results:
- Desorption of H-, O-, and OH- anions was observed from the hydrated DNA film.
- Below 15 eV, anions primarily originated from dissociative core-excited transient anions formed by electron capture in a DNA-H2O complex.
- A minor contribution to H- desorption came from weakly bonded water molecules.
- The presence of water increased the overall anion yield from DNA by a factor of 1.6.
Conclusions:
- Water significantly influences electron-induced anion desorption from DNA.
- A novel mechanism involving DNA-water complex transient anions contributes to anion formation.
- Hydration enhances the susceptibility of DNA to electron-induced dissociation, with implications for understanding radiation damage and extraterrestrial organic chemistry.
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